Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq55597 223 1e-53 seq18368 179 1e-40 seq138243 134 5e-27 seq2923 105 3e-18 >seq55597 Length=320 Score = 223 bits (246), Expect = 1e-53 Identities = 234/308 (76%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 3527 GTTCCCGCTATCCACCCCTGACACTGCCGGCGTATCGCGGCCTTGACGCGCTTGCTCTTG 3586 || || || ||||| ||||| || |||||| | || ||||| ||||||||||||||| Sbjct 13 GTGCCGGCGATCCAGCCCTGGCATTGCCGGGGGATTGCGGCGCGCACGCGCTTGCTCTTG 72 Query 3587 GTGTCCGATTCCTCGTGCGCCCGGATCATGACGAGCAGGCTGTACACGAGGTCCATCGGC 3646 || || || || ||||||||||||||||| || || |||||||| ||||| ||||| ||| Sbjct 73 GTATCGGACTCTTCGTGCGCCCGGATCATCACCAGGAGGCTGTAGACGAGATCCATGGGC 132 Query 3647 TGGGCGCGCAGCTTCTCCCGGTTGTACTCGCGGCCGTCGCTGGCCGTGACGACGGTGATG 3706 ||||| || ||| |||||| |||||||| |||||||| || || ||||||||| Sbjct 133 TGGGCCTTGAGTCCAGCCCTGTTGTATTCGCGGCCATCGCTGGCGGTCACCACGGTGATG 192 Query 3707 CCGGCGCCGACAATCTGACTGAGCTGGGCCTGCGCCTGGATGGGTTCCGCGCGGCTCAGG 3766 |||||| || ||||| | ||| ||||| ||||| ||||| || |||||||| ||| Sbjct 193 CCGGCGTTGATGATCTGCGCCAACTGCGCCTGAGCCTGAATGGGCTCGGCGCGGCTGAGG 252 Query 3767 CGATCGAGCCCTTCGACGATGAGAACGGAGCCGGTCGGAACCCGGCCATCCTCGACGGCC 3826 || || || || || ||||| || || || |||| || | ||| || || || | |||| Sbjct 253 CGGTCCAGGCCCTCCACGATCAGCACCGACCCGGAGGGGATCCGTCCCTCATCTATGGCC 312 Query 3827 CGGAGGAA 3834 ||||| Sbjct 313 GCCAGGAA 320 >seq18368 Length=1007 Score = 179 bits (198), Expect = 1e-40 Identities = 231/318 (73%), Gaps = 3/318 (1%) Strand=Plus/Plus Query 10149 GTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGTCCGTTACCTGCCG 10208 || |||||||| || | || || ||| | || || ||||| ||| |||||| |||| Sbjct 172 GTCAACAAGGTCATCATCGTGGGCAACCTCGGTGCTGATCCGGAAACACGTTACATGCCC 231 Query 10209 AGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGATCGATACAAGGACAAGGCG 10268 || ||||||||||| | |||||||| | || || |||||||| | |||||||||| Sbjct 232 AGTGGCGACGCGGTCACCAACATCCGCGTGGCAACCACCGATCGCTTTAAGGACAAGGGT 291 Query 10269 AGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCTTCGGTCGGCTGGCT 10328 ||||| || || || || || |||||||| ||| || ||||||||||||| |||| Sbjct 292 AGCGGTGAGATGCGCGAAGCCACCGAATGGCATCGCATCGCGTTCTTCGGTCGCTTGGCG 351 Query 10329 GAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCGAGGGGCGCATCAAG 10388 || |||| | |||| | ||| ||||| | || |||||||||||||| || | || Sbjct 352 GAAATCGCTGGCGAGTATCTGAAGAAGGGATCGTCGGTCTACATCGAGGGTCGTCTGAAA 411 Query 10389 ACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTACACGACCGAGATCGTCGCTGAC 10448 || || | || ||| || ||||||| | | |||| |||||||| ||||| || Sbjct 412 ACCCGTCAATG---GGAGAAAGACGGCCAGAAGCAATACAGCACCGAGATTGTCGCGGAG 468 Query 10449 CGCATGCAGATGCTCGGC 10466 | ||||||||||| ||| Sbjct 469 CAGATGCAGATGCTTGGC 486 >seq138243 Length=1642 Score = 134 bits (148), Expect = 5e-27 Identities = 226/327 (69%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 10140 ATGGCAAGCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGTCCGT 10199 |||||| || |||||||| || | || || ||| | || |||||| ||| |||| Sbjct 440 ATGGCATCAGTCAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCGC 381 Query 10200 TACCTGCCGAGCGGCGACGCGGTTGCGAACATCCGTCTCGCGACGACCGATCGATACAAG 10259 ||| |||||||||||||||| | || |||||| | || || | | || |||| Sbjct 380 TACATGCCGAGCGGCGACGCCATCGCCAACATCGCAGTGGCCACCTCGTACAAATCCAAG 321 Query 10260 GACAAGGCGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCTTCGGT 10319 ||| | |||||| || || ||| |||||||||||| |||| |||||||| Sbjct 320 GACCGCAACACCGGCGAGCAGAAAGAACTGACCGAATGGCACCGCATCTCCTTCTTCGGC 261 Query 10320 CGGCTGGCTGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCGAGGGG 10379 || || ||||| ||||||| | || ||||| || || | || |||||| |||| || Sbjct 260 CGTCTCGCTGAAATCGTCGGCCAGTACCTGAAGAAAGGTTCCTCGGTCTACGTCGAAGGC 201 Query 10380 CGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGTTACACGACCGAGATC 10439 ||| | |||| || |||| || | |||| || || ||| | ||||| ||| Sbjct 200 CGCCTGCAGACCCGCAAGTACACCGACAAGGACGGCATCGAACGCTACGCCACCGACATC 141 Query 10440 GTCGCTGACCGCATGCAGATGCTCGGC 10466 ||||||| |||||||||||| ||| Sbjct 140 ATCGCTGAAAACATGCAGATGCTGGGC 114 >seq2923 Length=1478 Score = 105 bits (116), Expect = 3e-18 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 30977 TGACGGCGCGCTACTTCCCGCAGGCGGGCGACTACCTCGTGATACAGGAGGACGGCTACC 31036 |||| |||||| || |||||||||| ||||||||||| || | ||||| |||||||||| Sbjct 1454 TGACCGCGCGCCACATCCCGCAGGCTGGCGACTACCTGGTCACCCAGGACGACGGCTACC 1395 Query 31037 AGTACCTCAACCCGCGCGAAGTGTTCGAGCGGAAGTACCGC 31077 ||| |||||||| || ||||||||||| ||||||||| Sbjct 1394 GCTACATCAACCCGAAGGACGTGTTCGAGCGCAAGTACCGC 1354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199123882091823