Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq2072468 113 2e-20 seq30454 86.0 2e-12 seq833845 80.6 9e-11 >seq2072468 Length=291 Score = 113 bits (124), Expect = 2e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16875 CGACGGCGGGTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCT 16934 ||| || || | ||| |||||||| || | || ||||||||||||| || ||| Sbjct 287 CGATGGAGGCGCCTATCAGCAGGTGCCGGTGGACGCAGTCGACGGCAAGACCACCACGCG 228 Query 16935 CTATGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGCGT 16994 ||| |||||||||| ||| ||||| ||||| ||| | | ||| ||| ||| ||||| Sbjct 227 CTACGAGCGCTCGCTTCGCATCGATTTGCCGGACGCCACCACTGGCTGGCAGATACGCGT 168 Query 16995 GCGCCGCATCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACGTCGAGGC 17054 ||||||| | ||||||||| | |||| | |||||||||| | || || | | Sbjct 167 GCGCCGCCTGACGCCGAACCAGAACACCAACAAGATCGCCGACACCATGCTGGT--GGCC 110 Query 17055 GATT--ACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCT 17102 | || || ||| ||||||| ||||| |||||||||| || ||||| Sbjct 109 GGTTGCACAGAGGTCATCGACGCCAAGCTGCGCTATCCGAATACTGCGCT 60 >seq30454 Length=402 Score = 86.0 bits (94), Expect = 2e-12 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 42716 GTTTCCAGACGG-GGTTCTGTCGACTGGGATTTCGATCTCGTACAACCTCGCCGTGATCA 42774 |||||| ||||| ||| | || || || | ||||| ||||||||||| || || | || Sbjct 178 GTTTCC-GACGGCGGTACGCTCCACCGGCCTGTCGATTTCGTACAACCTGGCGGTCACCA 236 Query 42775 CGTTTGGTGGATTCTCCGCCGC-GATCATTACGTGGGCGATTGCGACCACGCACAACAAC 42833 || ||||| || | | |||| |||| | |||||| |||||| | | || || ||| Sbjct 237 TCTTCGGTGG-TTTTGCCCCGCTGATCGTGACGTGGTTGATTGCCAGCTCGGGCAGCAAG 295 Query 42834 CTCGCGCCGGCATTCTACGTGATAGCAGCGGCCATCGTGAGCTTG 42878 ||||| ||| | | ||||||||| || || |||||| | ||| || Sbjct 296 CTCGCACCGTCGTACTACGTGATGGCCGCTGCCATCATCAGCGTG 340 >seq833845 Length=260 Score = 80.6 bits (88), Expect = 9e-11 Identities = 124/174 (71%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 22179 ATGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTG-ACCACATCAT 22237 ||| | || ||||| ||| ||||| ||||||||||| || || ||| | ||| || Sbjct 174 ATGCCCAAGCCCATCATTTCCTGGCCGGGCGGCAAGCGCCGCCT-ACTGAAGCACCTCTA 116 Query 22238 CCCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGCGCTGTA 22297 |||| ||| || | || ||||| |||||||||| ||||| ||||| || ||| | Sbjct 115 TCCGCACTTCCCAACCCATGACTGCTACGTCGAGGCATTCGCCGGCGGCGCCGCGTCGCT 56 Query 22298 CTTCATGCGACCG---CCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGA 22348 | ||||| ||| || ||| | | || || ||||||| ||||||||||| Sbjct 55 GCTGATGCGGCCGTATCCGGCCCAGATGGAAGTCCTCAACGACATCAACGGCGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171117247031174