Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq95629 109 1e-18 seq1991079 100 6e-16 seq362679 100 6e-16 seq123434 96.9 8e-15 seq862529 95.1 3e-14 seq139869 89.7 1e-12 >seq95629 Length=7091 Score = 109 bits (120), Expect = 1e-18 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| | || ||| || || || | || || || |||||||| || || |||| | Sbjct 3547 CCCCTC--AACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCA 3604 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 || | || ||||| || |||| ||||||| || ||||||||||| || | || | Sbjct 3605 AGGTGCGGCCATCTTCCAGCTGTTCCGCAGCAAAGATAAGCCTCTGTTGGTCTGCTGGGA 3664 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCT 104513 | || || || ||||| |||||||| ||||||| || | | | || | | |||| Sbjct 3665 TACCCTCCTTGTCCTGGATCTTTGC-CTTACATTGTCAATGTTGTCCGAACTCTACACCT 3723 Query 104514 CTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 3724 CTATAGTTATGGTCTTCCCGGTAAGAGTTTTCACAAAGATCTGCAT 3769 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || ||||||||||| || ||||| || || || || ||||||||||| Sbjct 3773 TTGCCAGCAAATATGAGCCTCTGTTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTG 3832 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | |||||| | || |||| || || ||||||| || || Sbjct 3833 GCTTTAACATTGTCAATGGTATCCGAACTCTCAGCCTCGAGAGTGATAGTCTAGCCGGTG 3892 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || |||||||| |||||||| Sbjct 3893 AGGGTCTTTACAAAGATCTGCAT 3915 >seq1991079 Length=1418 Score = 100 bits (110), Expect = 6e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||| | ||| || | || || || || || || ||| Sbjct 1200 GTGGACTCCTTCTGGATGTTATAGTCCGCTAGGGTGCGGCCATCCTCAAGCTGCTTACCA 1141 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| | || || || || || || || ||||| ||||| || || Sbjct 1140 GCAAAGATGAGGCGCTGCTAGTCCGGGGG-ATGCCCTCCTTGTCCTGGATCTTCGCCTTC 1082 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| ||| || | || ||||| | || |||||||| || || || || Sbjct 1081 ACGTTGTCTATGGTGTCAGATGACTCCACCTCCATGGTGATAGTCTTGCCGGTGAGGGTC 1022 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 1021 TTCACAAATATCTGCAT 1005 >seq362679 Length=1828 Score = 100 bits (110), Expect = 6e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||| || || || || | || || || ||||| || || ||||| | || || | Sbjct 1741 AGCCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGG 1682 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || || || || || || | ||| || || ||||| || || || Sbjct 1681 CCATCTTCGAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCC 1622 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||| ||||| || || || || || | ||| || | ||| || ||||| || || Sbjct 1621 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTC-CGAGGACTCAACCTCGAGGGT 1563 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||||||||| Sbjct 1562 GATGGTCTTGCCGGTGAGAGTCTTAACAAATATCTGCAT 1524 >seq123434 Length=6912 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 4082 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAG 4141 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || |||| || ||||| | || |||||||||||||||||||| || || || || | Sbjct 4142 CTAATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGG 4201 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 4202 GAATGCCCTCCTTGTCCTGAA 4222 >seq862529 Length=5245 Score = 95.1 bits (104), Expect = 3e-14 Identities = 107/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 104329 TATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 || |||| || || ||||| || || | ||| | ||| || ||||||||||| || |||| Sbjct 1310 TAGTCCCACCCCTGAGCCTCAGGACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAGT 1251 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 | | || || | || || || || || |||||||||||||||||||| || || || | Sbjct 1250 CGGCTAATGTCCGTCCATCGTCCAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTG 1191 Query 104448 GAGGTATTCCTTCTTTATCCTG 104469 | || || ||||| || ||||| Sbjct 1190 GTGGGATGCCTTCCTTGTCCTG 1169 >seq139869 Length=4701 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | || || || || || || || Sbjct 969 GTGGACTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCG 910 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || || || || || |||||||||||||| || Sbjct 909 GCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGAATCTTTGCCTTC 850 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||| || || || ||||| || || || || Sbjct 849 ACGTTGTCAATGGTGTCAGAAGACTCAACCTCCAGGGTGATGGTCTTCCCGGTGAGGGTC 790 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 789 TTGACAAAAATCTGCAT 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1120744597700908