Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq852834 134 1e-26 >seq852834 Length=7016 Score = 134 bits (148), Expect = 1e-26 Identities = 174/236 (74%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| ||||| | || | | || |||| ||| | ||||||| Sbjct 6473 ACGCCGGTGGAGCCGAACCCGCCCTCCCCGCGGACGGTGGCGTCGAGGTCCTCCACCTCG 6532 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || ||| | | | || | ||||| |||||| | |||||||| | ||| Sbjct 6533 GCGACCTCCGGCGTCGCGATCAC-CTGGACGATCATCTGCGCGACGCGGTCGCCGGGCTT 6591 Query 5620 TACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||| |||| || | |||| |||||| ||||| ||||| || |||||||||| Sbjct 6592 CACCGCGAAGTCCGCCT--CCGAGTGGTTGAAGAGCACGACGCCGACCGGGCCGCGGTAG 6649 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||||| ||||| || ||||||||||||||| ||||||||| ||||||||| || Sbjct 6650 TCGGCGTCGATCACCCCGGCGCCCACGTCGATGGAGTGCTTGAGCGCCAGGCCCGA 6705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419163522423512