Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq138792 104 2e-17 seq139869 98.7 8e-16 seq362679 95.1 1e-14 seq1978033 91.5 1e-13 seq878454 91.5 1e-13 seq102963 91.5 1e-13 seq948143 87.8 1e-12 seq95629 87.8 1e-12 seq218242 82.4 6e-11 >seq138792 Length=3226 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| ||||||||||| || ||||| || | ||||| Sbjct 288 CACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGGCCATCCTC 229 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || | ||||||||| ||| || | | |||||||||| Sbjct 228 AAGCTGCTTACCAGCAAAGATGAGACGCTGCTGGTCCGGGGGAATGCCTTCCTTGTCCTG 169 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | ||||| || | ||||||| ||| | ||| ||||| || Sbjct 168 GATCTTTGCCTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCCAATGTGATGGTCTT 109 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || || ||||| || ||||| Sbjct 108 GCCCGTGAGGGTCTTTACAAAGATTTGCAT 79 >seq139869 Length=4701 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || ||||| ||| |||||| || |||||||| || || || || || | |||| Sbjct 982 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC-AAGGGTGCGGCCATCCT 924 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||||||| || | || || |||||||| || || | | ||||||||| Sbjct 923 CAAGCTGCTTACCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCT 864 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | ||||| || | |||||| ||| | || ||||| | Sbjct 863 GAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAAGACTCAACCTCCAGGGTGATGGTCT 804 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||||||| || || |||||||||||||| Sbjct 803 TCCCGGTGAGGGTCTTGACAAAAATCTGCAT 773 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | ||| || || || ||| ||||| || ||||||||||| | Sbjct 772 ACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCCG- 714 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 ||| || || | ||||| |||||||| ||| || | || | |||||||| ||| | Sbjct 713 CAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGG 654 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| || || ||||| | | ||||| || | ||||| Sbjct 653 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGACTCAA 594 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || |||||||| || ||||| || |||||||| Sbjct 593 CCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 545 >seq362679 Length=1828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || | || || |||||| Sbjct 1726 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCTTCGAGCTGC 1667 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 1666 TTACCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTG 1607 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | ||||| ||||| || ||||| || |||| Sbjct 1606 GCCTTGACGTTGTCG--ATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCGG 1549 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||| || ||||| |||||||| Sbjct 1548 TGAGAGTCTTAACAAATATCTGCAT 1524 >seq1978033 Length=13150 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || |||||||||||||| | ||| | ||||| |||||||| ||| | | Sbjct 5246 CTCTTTCTGGATGTTGTAATCAGCTAGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAA 5187 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || || |||||||| ||| ||| | || ||| | ||| || || ||||| Sbjct 5186 GATCAATCGCTGCTGGTCCGGCGGGATACCCTCCATATCCTGGATCTTGGCCTTGACGTT 5127 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || || | |||||| ||||| || ||||| || |||||||| || ||||| Sbjct 5126 GTCAATCGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCAC 5067 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 5066 AAAGATCTGCATC 5054 >seq878454 Length=5435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || ||||||||||| |||| || | ||||| |||||| Sbjct 1036 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCAAGCTGC 977 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | | || | |||||||| ||| || | | ||||||||| || ||| Sbjct 976 TTGCCGGCAAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 917 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | |||||| ||| | || ||||| || || ||| Sbjct 916 GCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCTGTG 857 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| ||||||||||| Sbjct 856 AGGGTCTTCACGAAAATCTGCAT 834 >seq102963 Length=6263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | ||| | || || ||| |||||| || |||||||| || || Sbjct 3514 CCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3455 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || ||||||| |||||||||||| || | || | |||||||| ||| ||| Sbjct 3454 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 3395 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || ||||| | | || ||||| || | |||||| Sbjct 3394 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCCGAGGACTCCA 3337 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || || || || || ||||| || ||||||||| || Sbjct 3336 CCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 3284 >seq948143 Length=1505 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| ||||||||||| || || || || || | ||||||||||| Sbjct 308 TGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC-AAGGGTGCGGCCATCCTCCAGCTG 250 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||| ||| || | | ||||||||| || || Sbjct 249 CTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 190 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | ||||| |||| |||||| ||| | || || || || || || Sbjct 189 GGCCTTGACGTTGTCAATGGTGTCGGACGACTCCACCTCAAGAGTGATAGTCTTGCCAGT 130 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || || || || ||||||||| Sbjct 129 GAGGGTCTTGACGAAGATCTGCATC 105 >seq95629 Length=7091 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| || |||||| || || || ||||||||||| ||| ||||||| Sbjct 3333 ACCAAGTGAAGAGTAGACTCCTTCTGTATATTATAATCAGCCAAAGAACGCCCGTCCTCG 3392 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || | |||||| || |||| | || ||||| || | Sbjct 3393 AGCTGCTTTCCGGCAAAGATGAGCATCTGCTGGTCAGCCGGGATACCCTCCTTATCTTGA 3452 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 | || ||| | | | ||||| |||| ||| ||| | |||||||| || Sbjct 3453 TTCTTGGCCTTCACATTATCAATGGTGTCGGGCT-CTCAACCTCTAGGGTTATGGTCTTC 3511 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| |||||||||||||||||| Sbjct 3512 CCAGTGAGAGTCTTCACAAAAATCTGCATC 3541 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| |||||||||||||||||||| || | || |||||||| Sbjct 3568 TGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGGCCATCTTCCAGCTGT 3627 Query 48584 TTACCGCCGTAAATTAAA--CGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | |||| | ||| || | ||| || || | || | || ||||||||| || | Sbjct 3628 T--CCGCAGCAAAGATAAGCCTCTGTTGGTCTGCTGGGATACCCTCCTTGTCCTGGATCT 3685 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||| | | | | ||| | || | | || | ||| | |||||||| || |||| Sbjct 3686 T-TGCCTTACATTGTCAATGTTGTCCGAACTCTACACCTCTATAGTTATGGTCTTCCCGG 3744 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||||||||| ||||||||| Sbjct 3745 TAAGAGTTTTCACAAAGATCTGCATC 3770 >seq218242 Length=2478 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| ||||| | | || || | |||||||||||||| || | Sbjct 1661 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTG-CGACCATCCTCCAGCTGCTTGCCAGCAA 1603 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 | || | ||||||||| ||| || | | ||||||||| || || ||||| | Sbjct 1602 AGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 1543 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || ||||| |||| || ||| ||| | ||| ||||| || || ||||| || || Sbjct 1542 TGTCG--ATGGTGTCGGATGATTCCACCTCAAGTGTGATGGTCTTGCCAGTGAGGGTCTT 1485 Query 48712 CACAAAAATCTGCAT 48726 || || |||||||| Sbjct 1484 GACGAAGATCTGCAT 1470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410583258343901