Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq28588 120 2e-22 seq7353 86.0 4e-12 >seq28588 Length=668 Score = 120 bits (132), Expect = 2e-22 Identities = 163/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 71864 TACGGGATTTACCGATCTCAATAAGAAGACGGCAG-GGCTT-CAGCCGTCCGATCTCATC 71921 |||||| | ||||| ||| || | ||||| ||| ||||| ||||||||||| || || Sbjct 264 TACGGGTTACACCGACCTCGATGAAAAGAC--CAGCGGCTTGCAGCCGTCCGACCTGATT 207 Query 71922 ATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAATCTCGTCGAAAAT 71981 || ||||||| ||| ||||| ||||| || ||||| || |||||||| || || ||||| Sbjct 206 ATCGTCGCCGGCCGTCCATCGATGGGTAAAACCACCTTCGCGATGAACCTGGTGGAAAAC 147 Query 71982 GCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATGCCGAGCCACCAG 72041 |||| | || | ||| ||| ||||| |||| | ||| |||||||| || | | Sbjct 146 GCCGTGTTGCGCAGCGACAAGACCGTACTGGTGTACTCCCTCGAGATGCCAGGCGAATCG 87 Query 72042 CTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGAC 72085 ||||| ||||| ||| |||| || | || | || ||||| Sbjct 86 CTGATCATGCGTATGCTGTCTTCGCTCGGCCGAATCGACCAGAC 43 >seq7353 Length=217 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/193 (70%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 21201 GAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAACTTGCTGAAATTGCGAGTGAG 21260 ||| |||| |||||||| || ||||||| || | || || || || ||||| Sbjct 5 GAGAAAACCGAATGGCACCGTGTGTCGATGTTCGGCAAGGTGGCAGAGATCGCTGGTGAG 64 Query 21261 TATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAACTTAAAACCCGTAAGTGGACA 21320 || | || |||||||| ||||||||||||||||| || || ||||||| ||||| Sbjct 65 TACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGCAAGCTGCAAACCCGCGAGTGG--- 121 Query 21321 GATGACGCCGGTGTAGAACGTTACACGACGGAAATTATCGTCAGCCAGGGCGGCACCATG 21380 || | | ||| | | |||||||| || ||||| | ||| | | ||||||||| Sbjct 122 GAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCACCATG 181 Query 21381 CAAATGATCGGCG 21393 ||| || | |||| Sbjct 182 CAACTGCTGGGCG 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 295555944910221