Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005887.1 Length=42415 Score E Sequences producing significant alignments: (Bits) Value seq18201 118 3e-22 >seq18201 Length=11482 Score = 118 bits (130), Expect = 3e-22 Identities = 228/330 (69%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 6390 CTGCGGCATGCTCGAAGCGTACGCGGAAGTCGACAAGGCGCTGGCCGATCTGAACGGCAA 6449 ||||||||| || |||||| | || | ||||| | ||||| | ||||||||||| Sbjct 6285 CTGCGGCATTCTGGAAGCGCGCTCGCACATCGACGTCGAACTGGCGAAGCTGAACGGCAA 6344 Query 6450 CACCGCGGCATTCCGTCTGTCCGAAGACCGGGCGCAGATCGAGGGTATGAACCAGGAAGT 6509 | || || ||||| ||||| |||||| || ||||||| ||||||||| | Sbjct 6345 CGAAGCCGCCTTCCGCCTGTCGGAAGACGAAGCCTTCATCGAGGCGATGAACCAG-ACCA 6403 Query 6510 TGCGCAGACGC--TGTTCTACGGCAATGACGGCATCGCCCC-CGCCGAATTCACGGGGCT 6566 || || | ||| |||||||||| || |||| || ||| |||| | ||| ||| || Sbjct 6404 TG-GCCGGCGCCATGTTCTACGGTAACCCGGGCACCGACCCGCGCC-AGTTCCTGGGCCT 6461 Query 6567 GTCGCCGCGCTACAACTCGTTGAGCGCCGAGAACAAGGACAACGTCATCGACGCTGGCGG 6626 | | || |||| |||| ||||||| | |||| | ||| || ||||||| || || Sbjct 6462 GCAAACCCGTTACAGCTCGCTGAGCGCTGGGAACGGCCAGAACATCCTCGACGCCGGTGG 6521 Query 6627 CACCGGATCCGACAACGCCTCGGCATGGCTCGTTGTGTGGGGCCCGAATACCTGCCACTC 6686 |||||| || ||||| |||| | || || |||||||| ||| ||| | || Sbjct 6522 CACCGGCACCAACAACACCTCCATCTACCTGGTGGTGTGGGGTGAGAACACCGTCTTCTG 6581 Query 6687 GATCTACCCCAAGGGTTCGAAAGCAGGTCT 6716 | ||| |||||||||||||| || || Sbjct 6582 CCCGTTCCCGAAGGGTTCGAAAGCTGGCCT 6611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132260301994274