Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq873330 109 3e-19 seq98970 109 3e-19 seq841233 105 3e-18 seq1976362 102 4e-17 seq865982 102 4e-17 seq14190 100 1e-16 seq966005 98.7 5e-16 seq219994 98.7 5e-16 seq192648 98.7 5e-16 seq26518 96.9 2e-15 seq67176 95.1 6e-15 seq61850 95.1 6e-15 seq2009183 93.3 2e-14 seq895230 93.3 2e-14 seq865305 93.3 2e-14 seq171461 93.3 2e-14 seq155291 93.3 2e-14 seq140005 93.3 2e-14 seq124775 93.3 2e-14 seq70087 93.3 2e-14 seq66560 93.3 2e-14 seq217148 91.5 8e-14 seq139676 91.5 8e-14 seq22317 91.5 8e-14 seq141253 87.8 9e-13 seq40223 86.0 3e-12 >seq873330 Length=10837 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | ||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 5765 TAAAAAA--ATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 5708 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||| |||||||||| ||||| Sbjct 5707 CGCTCTAACCAGCTGAGCTAATAGGCCG 5680 >seq98970 Length=1947 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| ||| |||| |||| |||||||| | | |||||||| ||||||||||||||||||| Sbjct 1887 TTAGTAAGAAATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 1829 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 1828 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 1798 >seq841233 Length=3491 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 985 AAAAAAAAAACAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 928 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 927 GACGCTCTAACCAGCTGAGCTAATAGGCC 899 >seq1976362 Length=3148 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 352 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 293 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 292 CTGAGCTAATAGGCC 278 >seq865982 Length=2391 Score = 102 bits (112), Expect = 4e-17 Identities = 75/88 (85%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||||| ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 15 ATAAAAAATG----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 70 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 71 ACGCTCTAACCAGCTGAGCTAATAGGCC 98 >seq14190 Length=2350 Score = 100 bits (110), Expect = 1e-16 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| |||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 1336 AAAAAAGCAAAAAGTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 1395 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||| |||||||||| ||||| Sbjct 1396 GACGCTCTAACCAGCTGAGCTAATAGGCCG 1425 >seq966005 Length=695 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||| ||||||||||||| ||| Sbjct 27 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACG 84 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||| ||||||||| Sbjct 85 CTCTAACCAACTGAGATAATGGGCC 109 Score = 87.8 bits (96), Expect = 9e-13 Identities = 86/110 (78%), Gaps = 4/110 (4%) Strand=Plus/Plus Query 11422 TCCAGGGAAATATA--GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTT 11479 ||| |||||| | | ||| || ||||| || |||||||||| | | |||||||| Sbjct 186 TCCGGGGAAACAAAACGAAATATTAAAACTGCA--TTGGCCCATGCAGGTCTCGAACCTG 243 Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| || ||||||| || ||||||| |||| |||||||||| |||| Sbjct 244 CGACCTTGGCCTTATTAGGACCACGCTCTAACCAGCTGAGCTAATAGGCC 293 >seq219994 Length=1282 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 |||||||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 1106 AAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 1047 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 1046 CAGCTGAGCTAATAGGCC 1029 >seq192648 Length=998 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 530 AAAAA--AAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 473 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 472 CTCTAACCAGCTGAGCTAATAGGCC 448 >seq26518 Length=763 Score = 96.9 bits (106), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 748 AAAAAATTAT-TTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 690 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 689 GCTCTAACCAGCTGAGCTAATAGGCCG 663 >seq67176 Length=7014 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 5772 AAAAAAGATAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 5831 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 5832 GCTCTAACCAGCTGAGCTAATAGGCC 5857 >seq61850 Length=4575 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||| | | |||||||| |||||||||||||||||||| Sbjct 2750 AATAAAAAAGAATGCTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 2809 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 2810 GACGCTCTAACCAGCTGAGCTAATAGGCC 2838 >seq2009183 Length=778 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||| ||| ||| ||||||||| | | || ||||| |||||||||||||||||||||| Sbjct 378 AAATAATAAAAGTTGGCCCATACAGGTCTCAAACCTGTGACCTTCGCGTTATTAGCACGA 319 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 318 CGCTCTAACCAGCTGAGCTAATAGGCC 292 >seq895230 Length=1557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||| ||| ||| |||||||| | | |||||||| ||||||||||||||||||| Sbjct 1462 AAAAAAGAATTAAACGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCA 1403 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||| |||||||||| |||| Sbjct 1402 CGACGCTCTAACCAGCTGAGCTAATAGGCC 1373 >seq865305 Length=7037 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 2440 AAAAATAAAAGAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 2499 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 2500 CGCTCTAACCAGCTGAGCTAATAGGCC 2526 >seq171461 Length=2336 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || | |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 872 AAAAAAGAAAGAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 813 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 812 CGCTCTAACCAGCTGAGCTAATAGGCC 786 >seq155291 Length=2789 Score = 93.3 bits (102), Expect = 2e-14 Identities = 74/88 (84%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||| |||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 18 AAAAAA--AAATGCTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACG 75 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 76 ACGCTCTAACCAGCTGAGCTAATAGGCC 103 >seq140005 Length=2852 Score = 93.3 bits (102), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| || | |||||||| | | |||||||| ||||||||||||||||||| Sbjct 2426 AAAAAAAAAGAAAGAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCA 2367 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||| |||||||||| |||| Sbjct 2366 CGACGCTCTAACCAGCTGAGCTAATAGGCC 2337 >seq124775 Length=1808 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||| | | |||||||| |||||||||||||||||||||||||||| |||| Sbjct 1039 TTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 980 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 979 CTGAGCTAATAGGCC 965 >seq70087 Length=6181 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || | |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 3911 AAAAAAGAAAGAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 3970 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 3971 CGCTCTAACCAGCTGAGCTAATAGGCC 3997 >seq66560 Length=7005 Score = 93.3 bits (102), Expect = 2e-14 Identities = 78/97 (80%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAA------TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| ||||||||| | ||| |||||||| | | |||||||| ||||||| Sbjct 3269 TAGAAAAAATAAAAAAAAGAATTAAAAGTGGCCCATACAGGTCTCGAACCTGTGACCTTC 3210 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 ||||||||||||||||||||| |||| |||||||||| Sbjct 3209 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAAT 3173 >seq217148 Length=5897 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 4610 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4551 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 4550 TGAGCTAATAGGCC 4537 >seq139676 Length=8163 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 1202 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1143 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1142 TGAGCTAATAGGCC 1129 >seq22317 Length=3316 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| | | |||||||| |||||||||||||||||||||||||||| |||| | Sbjct 2006 TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1947 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1946 TGAGCTAATAGGCC 1933 >seq141253 Length=2504 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11443 TAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| ||| |||||||| | | |||||||| |||||||||||||||||||| Sbjct 1574 TAAAAAAAAAAAGGCTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 1515 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 1514 AACGCTCTAACCAGCTGAGCTAATAGGCC 1486 >seq40223 Length=380 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 50 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 108 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 254869087433476