Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq980466 149 3e-31 seq31840 132 2e-26 seq834865 131 7e-26 seq57642 114 5e-21 seq7353 105 3e-18 seq18855 89.7 2e-13 >seq980466 Length=550 Score = 149 bits (164), Expect = 3e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 19300 CGCCCTGAGCAAAGCGAAGATCCTCGAGGAGTTGCCGCTGCTGACGGACAAGCCGGACAC 19359 ||| |||||||| || ||||| |||||||| |||||||||| || |||||||| ||||| Sbjct 3 CGCGCTGAGCAAGGCCAAGATTATCGAGGAGCTGCCGCTGCTCACCGACAAGCCAGACAC 62 Query 19360 GGCGTACCGCTTGCTGAAGCAGATCGCTGCGGCCGGTGTGATCGATCTGTCGAGCACAGC 19419 || |||||| || ||||| | | | ||| ||| |||| || || || ||||| | Sbjct 63 TGCTTACCGCATGTTGAAGGCCCTGGAAGAGGCAGGTTTGATTGAGCTTTCCAGCACTTC 122 Query 19420 AACCATCACACTCGTGCGGCTCACTGCGAAGGGGCAGGAGTGGAATCGGAAACTGGACGG 19479 | |||||| || | || || || | ||||| | |||||||| | ||| || ||||| Sbjct 123 GAACATCACGCTGTTCCGCCTGACCGAGAAGGCGATCGAGTGGAACCAGAAGCTCGACGG 182 Query 19480 GTCGGAAAAATATCCGACCC 19499 |||||||||||||||||||| Sbjct 183 GTCGGAAAAATATCCGACCC 202 Score = 82.4 bits (90), Expect = 3e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 19773 AGATACCGGCCGACATGCCAGGCCCGAAAGACCCGAACTGCAAGGCGTACCGCACATGGG 19832 |||| || || |||||||| ||||| ||||||| | |||||| | | | |||| Sbjct 425 AGATTCCCGCTGACATGCCCGGCCCAAAAGACCAGTCCTGCAAAACCTTCAAGGTCTGGG 484 Query 19833 CCAACTACGCCATGGCCTATCGCACTCGATACACCGCTTGGCCGGTTTGGAACGC 19887 | ||||||||||||||||| |||| || |||| | | ||||| || |||||||| Sbjct 485 CGAACTACGCCATGGCCTACCGCAAGCGCTACAGCACCTGGCCCGTGTGGAACGC 539 >seq31840 Length=478 Score = 132 bits (146), Expect = 2e-26 Identities = 171/233 (73%), Gaps = 15/233 (6%) Strand=Plus/Minus Query 33532 ACCTGGAGCA-CACCCCTGATGGCAAATACCCTCTATGACTATGCCCGCCAGCGCTTCCT 33590 |||||||||| |||| ||||||||||||||||| ||| | | ||| |||||||| || Sbjct 227 ACCTGGAGCATCACC----ATGGCAAATACCCTCTACGACAAGGGCCGGCAGCGCTTTCT 172 Query 33591 GGAGGGTCAGTTCAACTGGATGACCGACACGATCAAGGTGATCCTGGTCGATACCGGCGC 33650 |||| ||| |||||||| |||||||||| |||||| |||||||| || |||| ||| Sbjct 171 CGAGGCGCAGATCAACTGGCTGACCGACACCATCAAGTGCATCCTGGTGGACACCGCCGC 112 Query 33651 ATACACGCCGCAGACT--GCGATCCACCAGTACCTGTCGGATATCCCGTCGTCGTCCCGG 33708 |||||| || ||| | | ||| ||| ||||||||| || ||| | ||| | || Sbjct 111 CTACACG--GCCAACTTCTCCACGCACGAGTTCCTGTCGGACATTCCGACCTCGGCACGC 54 Query 33709 ATCG------CTGGCCCGGTCACTCTCACCGCGAAGACCACCACTGGCGGCGC 33755 |||| | || || || || ||| ||||||||||| ||||| || Sbjct 53 ATCGGCACCACCAGCGGTGTGACCCTGACCAGCAAGACCACCACCGGCGGTGC 1 >seq834865 Length=202 Score = 131 bits (144), Expect = 7e-26 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 7078 CGAGCTATCATGAATAAGCGCTCGCGGCTGGTTGGTGCCCCGAAGTCGCATGCCTTGATG 7137 || || |||||||| | |||||||||||||| || || ||||||||||| ||||||||| Sbjct 201 CGGGCGATCATGAACAGTCGCTCGCGGCTGGTCGGCGCGCCGAAGTCGCAGGCCTTGATG 142 Query 7138 ACGCGCCATTCCACCTGGTAGCCCATCCCCTCCAGCAGGTGAACGAACCGGCGCCAGGTT 7197 || |||||||| || |||||||| | | |||| | |||||| ||| ||| Sbjct 141 ACCCGCCATTCAACGGCGTAGCCCAGGCGTTGCAGCTCGGCGACGAACACTGTCCACGTT 82 Query 7198 TGGCCGCGGCGTTTGGGGTCGGGAATCAGGAACTGTTGCTGGACTGGAACGTGTTCGCCT 7257 || ||||| ||||| ||||| || | ||||||||| || || || || ||| |||||| Sbjct 81 TGCCCGCGACGTTTCGGGTCAGGTACCAGGAACTGCTGGTGAACCGGTACGACTTCGCCA 22 Query 7258 GG 7259 || Sbjct 21 GG 20 >seq57642 Length=203 Score = 114 bits (126), Expect = 5e-21 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5739 CCATGGATCGTTGGCTCGCGCGATCGCTGCCATCGGCGGCGGGCTGACGCTGTTACCGCA 5798 ||| || || |||||||| || | || |||||||||||||||||||||||||| ||||| Sbjct 98 CCACGGGTCATTGGCTCGAGCCAGTGCGGCCATCGGCGGCGGGCTGACGCTGTTGCCGCA 157 Query 5799 CATATGCACCTGTTCGGTTTTGCTGAACGGCTTGCCGTCAGCGCCG 5844 ||| || ||||| | || ||| |||||||||||||||| |||||| Sbjct 158 CATGTGTACCTGCTGAGTCTTGGTGAACGGCTTGCCGTCGGCGCCG 203 >seq7353 Length=217 Score = 105 bits (116), Expect = 3e-18 Identities = 137/189 (72%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223 |||||| |||||||||||| |||| | ||||||||||| | || ||| |||| | | Sbjct 196 GCCGCCCAGCAGTTGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTT 137 Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283 |||||| | || |||| |||||| | || ||||||||||||||||||| || Sbjct 136 GATGCCGTCTTTTTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGA 80 Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343 || || |||||||| | | ||||| || |||| | ||| || | | || ||||| Sbjct 79 ACCTTTGCGCAGGTACTCACCAGCGATCTCTGCCACCTTGCCGAACATCGACACACGGTG 20 Query 11344 CCACTCGGT 11352 ||| ||||| Sbjct 19 CCATTCGGT 11 >seq18855 Length=767 Score = 89.7 bits (98), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 22911 TTCGTCCAGGAATACCTGGTAGACCTGAACGCGACCCAAGCTGCGATCCGTGCCAAGTAC 22970 |||||| | ||||||||||| ||||||||||| ||| | ||||||||||||||| ||| Sbjct 550 TTCGTCGATGAATACCTGGTTGACCTGAACGCAACCAAGGCTGCGATCCGTGCCGGCTAC 609 Query 22971 AGCGCCAAGACTGC 22984 ||||||||||| || Sbjct 610 AGCGCCAAGACGGC 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203219079015316