Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1938502 131 3e-26 seq363617 129 9e-26 seq2040898 122 1e-23 seq1646274 120 5e-23 seq73575 118 2e-22 seq387641 114 2e-21 seq855265 105 1e-18 seq862585 102 1e-17 seq969076 100 4e-17 seq886266 100 4e-17 seq875865 96.9 5e-16 seq1991808 93.3 7e-15 seq880905 93.3 7e-15 seq866648 93.3 7e-15 seq62778 91.5 2e-14 seq217808 86.0 1e-12 >seq1938502 Length=233 Score = 131 bits (144), Expect = 3e-26 Identities = 166/226 (73%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 225 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 167 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| || ||||| || || ||||| |||| || | |||| || |||| Sbjct 166 TCCGGCGTTTGGCCCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 107 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||||||||||| ||| ||| |||| || || || ||| |||| Sbjct 106 CCCGCGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCG 47 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||||||| || ||||| |||||| ||||||| ||||||| || Sbjct 46 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGC 1 >seq363617 Length=331 Score = 129 bits (142), Expect = 9e-26 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 128 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 186 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| || ||||| || || ||||| |||| ||| || |||| || |||| Sbjct 187 TCCGCCGTCTGGCCCGGCGTGGCGGCGTGAAGCGCATCTCCGGACTGATCTACGAGGAGA 246 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| |||| Sbjct 247 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 306 Query 16611 AGCACGCTAAACGTAAGACTGTCAC 16635 ||||||| || ||||| ||||| Sbjct 307 AGCACGCCCGCCGCAAGACCGTCAC 331 >seq2040898 Length=331 Score = 122 bits (134), Expect = 1e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||||||| ||||| Sbjct 150 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGCCTGGCTCGCCGTGGC 209 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 210 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 269 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 270 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 329 Query 16634 AC 16635 || Sbjct 330 AC 331 >seq1646274 Length=326 Score = 120 bits (132), Expect = 5e-23 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 124 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCGCGGCGTGGC 183 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| ||| || |||| || |||| || | || ||||||||||| Sbjct 184 GGCGTGAAGCGCATCTCGGGACTGATCTACGAGGAGACCCGGGGCGTGCTGAAGATCTTC 243 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||| | || ||||| ||| Sbjct 244 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCNNNNNNNCCCGCCGCAAGACCGTC 303 Query 16634 ACCTCCATGGATATCGTCTATGC 16656 ||| ||||||| ||||||| || Sbjct 304 ACCGCCATGGACGTCGTCTACGC 326 >seq73575 Length=2381 Score = 118 bits (130), Expect = 2e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||||||||| || |||| || ||||| | | ||||| | Sbjct 1362 GACAACATCCAGGGCATCACCAAGCCGGCCATCCAGCGGCTGGCGCACAGGGGTGGCGCG 1421 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| |||| | | |||| || |||| || | || | || ||||||||| || Sbjct 1422 AAGCGCATCTCCAGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAATATCTTCCTCGAG 1481 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||||| || || || ||| ||||||||||| || ||||| |||||| || Sbjct 1482 AACGTTATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCC 1541 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| ||||||||||| | || || || || || Sbjct 1542 ATGGACATCGTCTATGCGCTCAAGCGGCAGGGACG 1576 >seq387641 Length=549 Score = 114 bits (126), Expect = 2e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || |||| || | || Sbjct 50 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGGCTGGTGCGCAGGGGC 109 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 | | ||||| |||| || | |||| || |||| |||| ||| | ||||||||| Sbjct 110 GTCTTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTTCTCAAGATCTTC 169 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| | | |||| ||| || || ||| ||||||||||| || ||||| ||| Sbjct 170 CTCGAGAACATCATCCGTGACGCCATCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 229 Query 16634 ACCTCCATGGATATCGTC 16651 ||| ||||||| ||||| Sbjct 230 ACCACCATGGACGTCGTC 247 >seq855265 Length=1343 Score = 105 bits (116), Expect = 1e-18 Identities = 170/242 (70%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 ||||| || || | |||| || || || |||||| | || ||||||||||| || ||||| Sbjct 439 AAGCGCCACCGGAAGATC-CTCCGCGAGAACATCTATGGCATCACCAAGCCGGCGATCCG 497 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 | ||||| | | || || || ||||| |||| || | ||||| || |||| || Sbjct 498 GAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCCGGCATCGTCTACGAGGAGACCCG 557 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 | ||| | ||| |||||||| || ||| |||| || | || ||| ||| |||| Sbjct 558 CGTTGTCCTCAAGCTCTTCCTCGAGCACGTCATCCGCGACGTCGTCGTCTACACCCAGCA 617 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || ||||| |||| | ||| ||| ||||||| || | || || || ||||| Sbjct 618 CGCCCGCCGCAAGACCGTCATCGCCACGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 677 Query 16675 TA 16676 || Sbjct 678 TA 679 >seq862585 Length=6502 Score = 102 bits (112), Expect = 1e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||| ||| || |||||||||| | ||||| |||| || ||| || || Sbjct 2642 TCTGCGCGACAACACCCAGGGCATCACCAAGCAGTCCATCCGCCGTCAGGATCGCCGGGG 2583 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| |||| || | |||| | ||| || | || | |||||||| Sbjct 2582 CGGCGTGAAGCGCATCTCGGGGCTCATCTACAAGAAGACCCGCGGCGTGCTCAAGATCTT 2523 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| ||||| | || || | | ||||||||| | || ||||| || Sbjct 2522 CCTCGAGAACGTCATCCACAACGCCGTCACCCACACCGAGCACACCCGCCGCAAGACCGT 2463 Query 16633 CACCTCCATGGATATCGTCTATGC 16656 |||| |||||||| ||||||| || Sbjct 2462 CACCGCCATGGATGTCGTCTACGC 2439 >seq969076 Length=712 Score = 100 bits (110), Expect = 4e-17 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||| ||||| || | Sbjct 186 CGCCAAGCGCCACCGAAAGGTC-CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGA 128 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || ||||| || || || ||||| ||||| |||| || | |||| || |||| Sbjct 127 TTCGGCGGCTGGCGCGGCGGGGCGGAGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 68 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || ||| |||| Sbjct 67 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 8 Query 16611 AGCACGC 16617 ||||||| Sbjct 7 AGCACGC 1 >seq886266 Length=2016 Score = 100 bits (110), Expect = 4e-17 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 1846 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 1904 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || ||||| || || || ||||| |||| || | |||| || |||| Sbjct 1905 TCCGTCGTCTTGCGCGTCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 1964 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 1965 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCC 2003 >seq875865 Length=2302 Score = 96.9 bits (106), Expect = 5e-16 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| ||||||||| Sbjct 2167 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGTCGTGGT 2226 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 2227 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 2286 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 2287 CTCGAGAACGTCATCC 2302 >seq1991808 Length=995 Score = 93.3 bits (102), Expect = 7e-15 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||||| ||||| || || || Sbjct 840 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGCCTGGCGCGCCGCGGC 899 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 900 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 959 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 960 CTCGAGAACGTCATCC 975 >seq880905 Length=3163 Score = 93.3 bits (102), Expect = 7e-15 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||| ||||| || ||||| || |||||||| || || Sbjct 3008 CTGCGAGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGGCTGGCTCGGCGGGGC 3067 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 3068 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 3127 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 3128 CTCGAGAACGTCATCC 3143 >seq866648 Length=1155 Score = 93.3 bits (102), Expect = 7e-15 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || |||||||| ||||| || || || Sbjct 156 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGGCTGGCGCGGCGCGGC 97 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 96 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 37 Query 16574 CTCAAGACCGTTATCC 16589 ||| ||| ||| |||| Sbjct 36 CTCGAGAACGTCATCC 21 >seq62778 Length=4694 Score = 91.5 bits (100), Expect = 2e-14 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||| | || ||||||||||| || || Sbjct 3484 CGCGAAGCGCCACCGCAAGGTGCTGCGCGACAACATCTAGGGCATCACCAAGCCGGCCAT 3543 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || | || || || ||||| ||| | | | || || |||| Sbjct 3544 CCGGCGGCTGGCGCGCAGGGGCGGCGTGAAGCGCACCTCCAGGCTCATATACGAGGAGAC 3603 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||||| ||| ||| | || || || || ||| | ||| Sbjct 3604 CCGCGGCGTGCTCAAGATCTTCCTTGAGAACGTCAGCCGCGACGCCGTCACCTACATCGA 3663 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| |||||| ||||||| || |||||| | | || || || || Sbjct 3664 GCAAGCCCGCCGCAAGACCGTCACCGCCATGGACGTCATCTATGAACTCAAGCGGCAGGG 3723 Query 16672 CCG 16674 || Sbjct 3724 ACG 3726 >seq217808 Length=8273 Score = 86.0 bits (94), Expect = 1e-12 Identities = 171/253 (68%), Gaps = 14/253 (6%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| || | || Sbjct 2340 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCCCGGAGGGGC 2281 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | | || || |||| || | || | ||||||||| Sbjct 2280 GGCGTGAAGCGCATCTCGGGGCTCATTTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 2221 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCG---AGCACG----CTA------- 16619 ||| ||| ||| |||| || || || ||| |||| | ||| ||| Sbjct 2220 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGCCATGGACGTCGTCTACGCGCCC 2161 Query 16620 AACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGA 16679 || ||||| |||||| ||||||| ||||||| || | || || || ||||| | Sbjct 2160 GCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCC 2101 Query 16680 TTTATGGTTTTGG 16692 | ||||| || || Sbjct 2100 TCTATGGCTTCGG 2088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 77175360570393