Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq1938502 131 3e-26
seq363617 129 9e-26
seq2040898 122 1e-23
seq1646274 120 5e-23
seq73575 118 2e-22
seq387641 114 2e-21
seq855265 105 1e-18
seq862585 102 1e-17
seq969076 100 4e-17
seq886266 100 4e-17
seq875865 96.9 5e-16
seq1991808 93.3 7e-15
seq880905 93.3 7e-15
seq866648 93.3 7e-15
seq62778 91.5 2e-14
seq217808 86.0 1e-12
>seq1938502
Length=233
Score = 131 bits (144), Expect = 3e-26
Identities = 166/226 (73%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || || | | || || || || |||||||| || ||||||||||| || |
Sbjct 225 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 167
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||| |||| || ||||| || || ||||| |||| || | |||| || ||||
Sbjct 166 TCCGGCGTTTGGCCCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 107
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || | ||||||||||| ||| ||| |||| || || || ||| ||||
Sbjct 106 CCCGCGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACCG 47
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656
||||||| || ||||| |||||| ||||||| ||||||| ||
Sbjct 46 AGCACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGC 1
>seq363617
Length=331
Score = 129 bits (142), Expect = 9e-26
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || || | | || || || || |||||||| || ||||||||||| || |
Sbjct 128 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCA 186
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| |||||||| || ||||| || || ||||| |||| ||| || |||| || ||||
Sbjct 187 TCCGCCGTCTGGCCCGGCGTGGCGGCGTGAAGCGCATCTCCGGACTGATCTACGAGGAGA 246
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || | |||||||||||| ||| ||| |||| || || || ||| ||||
Sbjct 247 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 306
Query 16611 AGCACGCTAAACGTAAGACTGTCAC 16635
||||||| || ||||| |||||
Sbjct 307 AGCACGCCCGCCGCAAGACCGTCAC 331
>seq2040898
Length=331
Score = 122 bits (134), Expect = 1e-23
Identities = 136/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || |||||||| |||||
Sbjct 150 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGCCTGGCTCGCCGTGGC 209
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || || |||| || |||| || | || | |||||||||
Sbjct 210 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 269
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| || || || ||| ||||||||||| || ||||| |||
Sbjct 270 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 329
Query 16634 AC 16635
||
Sbjct 330 AC 331
>seq1646274
Length=326
Score = 120 bits (132), Expect = 5e-23
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || ||||| || |||||
Sbjct 124 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCGCGGCGTGGC 183
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| ||| || |||| || |||| || | || |||||||||||
Sbjct 184 GGCGTGAAGCGCATCTCGGGACTGATCTACGAGGAGACCCGGGGCGTGCTGAAGATCTTC 243
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| || || || ||| ||| | || ||||| |||
Sbjct 244 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCNNNNNNNCCCGCCGCAAGACCGTC 303
Query 16634 ACCTCCATGGATATCGTCTATGC 16656
||| ||||||| ||||||| ||
Sbjct 304 ACCGCCATGGACGTCGTCTACGC 326
>seq73575
Length=2381
Score = 118 bits (130), Expect = 2e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519
|| |||||||| || ||||||||||| || |||| || ||||| | | ||||| |
Sbjct 1362 GACAACATCCAGGGCATCACCAAGCCGGCCATCCAGCGGCTGGCGCACAGGGGTGGCGCG 1421
Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579
||||| |||| | | |||| || |||| || | || | || ||||||||| ||
Sbjct 1422 AAGCGCATCTCCAGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAATATCTTCCTCGAG 1481
Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639
| |||||||| || || || ||| ||||||||||| || ||||| |||||| ||
Sbjct 1482 AACGTTATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACCGCC 1541
Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||||| ||||||||||| | || || || || ||
Sbjct 1542 ATGGACATCGTCTATGCGCTCAAGCGGCAGGGACG 1576
>seq387641
Length=549
Score = 114 bits (126), Expect = 2e-21
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || |||| || | ||
Sbjct 50 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGGCTGGTGCGCAGGGGC 109
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
| | ||||| |||| || | |||| || |||| |||| ||| | |||||||||
Sbjct 110 GTCTTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGTGGCGTTCTCAAGATCTTC 169
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| | | |||| ||| || || ||| ||||||||||| || ||||| |||
Sbjct 170 CTCGAGAACATCATCCGTGACGCCATCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 229
Query 16634 ACCTCCATGGATATCGTC 16651
||| ||||||| |||||
Sbjct 230 ACCACCATGGACGTCGTC 247
>seq855265
Length=1343
Score = 105 bits (116), Expect = 1e-18
Identities = 170/242 (70%), Gaps = 2/242 (1%)
Strand=Plus/Plus
Query 16436 AAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494
||||| || || | |||| || || || |||||| | || ||||||||||| || |||||
Sbjct 439 AAGCGCCACCGGAAGATC-CTCCGCGAGAACATCTATGGCATCACCAAGCCGGCGATCCG 497
Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554
| ||||| | | || || || ||||| |||| || | ||||| || |||| ||
Sbjct 498 GAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCCGGCATCGTCTACGAGGAGACCCG 557
Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614
| ||| | ||| |||||||| || ||| |||| || | || ||| ||| ||||
Sbjct 558 CGTTGTCCTCAAGCTCTTCCTCGAGCACGTCATCCGCGACGTCGTCGTCTACACCCAGCA 617
Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
||| || ||||| |||| | ||| ||| ||||||| || | || || || |||||
Sbjct 618 CGCCCGCCGCAAGACCGTCATCGCCACGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 677
Query 16675 TA 16676
||
Sbjct 678 TA 679
>seq862585
Length=6502
Score = 102 bits (112), Expect = 1e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512
||| || || |||| ||| || |||||||||| | ||||| |||| || ||| || ||
Sbjct 2642 TCTGCGCGACAACACCCAGGGCATCACCAAGCAGTCCATCCGCCGTCAGGATCGCCGGGG 2583
Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572
|| || ||||| |||| || | |||| | ||| || | || | ||||||||
Sbjct 2582 CGGCGTGAAGCGCATCTCGGGGCTCATCTACAAGAAGACCCGCGGCGTGCTCAAGATCTT 2523
Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632
|||| ||| ||| ||||| | || || | | ||||||||| | || ||||| ||
Sbjct 2522 CCTCGAGAACGTCATCCACAACGCCGTCACCCACACCGAGCACACCCGCCGCAAGACCGT 2463
Query 16633 CACCTCCATGGATATCGTCTATGC 16656
|||| |||||||| ||||||| ||
Sbjct 2462 CACCGCCATGGATGTCGTCTACGC 2439
>seq969076
Length=712
Score = 100 bits (110), Expect = 4e-17
Identities = 136/187 (73%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || || | | || || || || |||||||| || ||||| ||||| || |
Sbjct 186 CGCCAAGCGCCACCGAAAGGTC-CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCGA 128
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
| || || ||||| || || || ||||| ||||| |||| || | |||| || ||||
Sbjct 127 TTCGGCGGCTGGCGCGGCGGGGCGGAGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 68
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || | |||||||||||| ||| ||| |||| || || || ||| ||||
Sbjct 67 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCG 8
Query 16611 AGCACGC 16617
|||||||
Sbjct 7 AGCACGC 1
>seq886266
Length=2016
Score = 100 bits (110), Expect = 4e-17
Identities = 119/159 (75%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || || | | || || || || |||||||| || ||||||||||| || |
Sbjct 1846 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 1904
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||||||||| || ||||| || || || ||||| |||| || | |||| || ||||
Sbjct 1905 TCCGTCGTCTTGCGCGTCGCGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 1964
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589
|| | || | |||||||||||| ||| ||| ||||
Sbjct 1965 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCC 2003
>seq875865
Length=2302
Score = 96.9 bits (106), Expect = 5e-16
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||| ||||| || ||||| || ||||| |||||||||
Sbjct 2167 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGTCGTGGT 2226
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || | |||| || |||| || | || | |||||||||
Sbjct 2227 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 2286
Query 16574 CTCAAGACCGTTATCC 16589
||| ||| ||| ||||
Sbjct 2287 CTCGAGAACGTCATCC 2302
>seq1991808
Length=995
Score = 93.3 bits (102), Expect = 7e-15
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || |||||||| ||||| || || ||
Sbjct 840 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGCCTGGCGCGCCGCGGC 899
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || | |||| || |||| || | || | |||||||||
Sbjct 900 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 959
Query 16574 CTCAAGACCGTTATCC 16589
||| ||| ||| ||||
Sbjct 960 CTCGAGAACGTCATCC 975
>seq880905
Length=3163
Score = 93.3 bits (102), Expect = 7e-15
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| ||||| |||||||| || ||||| ||||| || ||||| || |||||||| || ||
Sbjct 3008 CTGCGAGACAACATCCAGGGGATCACGAAGCCGGCGATCCGGCGGCTGGCTCGGCGGGGC 3067
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || | |||| || |||| || | || | |||||||||
Sbjct 3068 GGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 3127
Query 16574 CTCAAGACCGTTATCC 16589
||| ||| ||| ||||
Sbjct 3128 CTCGAGAACGTCATCC 3143
>seq866648
Length=1155
Score = 93.3 bits (102), Expect = 7e-15
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || |||||||| ||||| || || ||
Sbjct 156 CTGCGGGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGGCTGGCGCGGCGCGGC 97
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || | |||| || |||| || | || | |||||||||
Sbjct 96 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 37
Query 16574 CTCAAGACCGTTATCC 16589
||| ||| ||| ||||
Sbjct 36 CTCGAGAACGTCATCC 21
>seq62778
Length=4694
Score = 91.5 bits (100), Expect = 2e-14
Identities = 166/243 (68%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| || || || |||||| | || ||||||||||| || ||
Sbjct 3484 CGCGAAGCGCCACCGCAAGGTGCTGCGCGACAACATCTAGGGCATCACCAAGCCGGCCAT 3543
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || | || || || ||||| ||| | | | || || ||||
Sbjct 3544 CCGGCGGCTGGCGCGCAGGGGCGGCGTGAAGCGCACCTCCAGGCTCATATACGAGGAGAC 3603
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || | ||||||||||| ||| ||| | || || || || ||| | |||
Sbjct 3604 CCGCGGCGTGCTCAAGATCTTCCTTGAGAACGTCAGCCGCGACGCCGTCACCTACATCGA 3663
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || ||||| |||||| ||||||| || |||||| | | || || || ||
Sbjct 3664 GCAAGCCCGCCGCAAGACCGTCACCGCCATGGACGTCATCTATGAACTCAAGCGGCAGGG 3723
Query 16672 CCG 16674
||
Sbjct 3724 ACG 3726
>seq217808
Length=8273
Score = 86.0 bits (94), Expect = 1e-12
Identities = 171/253 (68%), Gaps = 14/253 (6%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
|| || || |||||||| || ||||||||||| || ||||| || ||||| || | ||
Sbjct 2340 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGCCGCCTGGCCCGGAGGGGC 2281
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || ||||| |||| || | | || || |||| || | || | |||||||||
Sbjct 2280 GGCGTGAAGCGCATCTCGGGGCTCATTTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 2221
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCG---AGCACG----CTA------- 16619
||| ||| ||| |||| || || || ||| |||| | ||| |||
Sbjct 2220 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGCCATGGACGTCGTCTACGCGCCC 2161
Query 16620 AACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGA 16679
|| ||||| |||||| ||||||| ||||||| || | || || || ||||| |
Sbjct 2160 GCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCGCACCC 2101
Query 16680 TTTATGGTTTTGG 16692
| ||||| || ||
Sbjct 2100 TCTATGGCTTCGG 2088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 77175360570393
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