Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq900588 551 9e-152 seq780762 89.7 8e-13 >seq900588 Length=4557 Score = 551 bits (610), Expect = 9e-152 Identities = 689/942 (73%), Gaps = 2/942 (0%) Strand=Plus/Plus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || ||||| |||||| | |||||||| | ||| | | | ||||| | ||||| | Sbjct 3042 GGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTAT 3100 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || |||||||| || ||||| || ||||| || || || || || || || ||||||| Sbjct 3101 CGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGCGAGCCTGTTTCTGGTTC 3160 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 || | ||||| ||||| || ||||||||||| || |||| |||| || ||||| Sbjct 3161 TTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGG 3220 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 || ||||| || || || |||||||| ||| || ||||||||||| | ||||||||||| Sbjct 3221 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGG 3280 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 |||||| || | | | | |||||| | | || | | || ||||| | | Sbjct 3281 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 3340 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970 |||||||||| | |||| | ||||||||||||||||| |||||| |||||||| || Sbjct 3341 GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCC 3400 Query 211971 TGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGA 212030 ||| |||| ||| ||||| ||| | ||||||| | ||||| || || || || Sbjct 3401 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGA 3460 Query 212031 CGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACA 212090 |||||||||||||| || || || || |||||||| ||| | |||||||| ||||| || Sbjct 3461 TGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCA 3520 Query 212091 TAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATT 212150 |||||||||||||| |||||||| ||| |||||| || ||| | ||||| || | | Sbjct 3521 CAACATCCTTATGCATCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCT 3580 Query 212151 ATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTT 212210 |||| ||||||||| ||||| | || || ||| | ||| | ||||| |||| Sbjct 3581 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACTACTGAAAA 3640 Query 212211 AGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGC 212270 || || || | |||||||| || || ||||| |||||||| ||||| || || || Sbjct 3641 TGAATCTGCTAATGAGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGC 3700 Query 212271 TGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAG 212330 ||| ||||| || || || || | |||||||| ||||| ||||||||| | Sbjct 3701 TGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 3760 Query 212331 TTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTAT 212390 ||||||||||||| | || | |||||||| | | | ||||| || || | ||||| Sbjct 3761 TTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGAATCTGGTTCACTGCTTTAGGTAT 3820 Query 212391 CTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATC 212450 | || ||||| |||||||||||||| ||||| ||||||||||| || |||||| Sbjct 3821 TAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 3880 Query 212451 AGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 212510 |||| ||| || |||||||| |||| | | ||| | || ||||||||||||||||| Sbjct 3881 AGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGT 3940 Query 212511 TATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| | ||||| ||||||||||| || |||||||| Sbjct 3941 AATGCACGAACGTAATGCTCACAACTTCCCTCTAGACTTAGC 3982 >seq780762 Length=275 Score = 89.7 bits (98), Expect = 8e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 212469 TTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGC 212528 ||||| |||| | | ||| | || ||||||||||||||||| ||||||||| | ||||| Sbjct 275 TTGGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGC 216 Query 212529 ACACAACTTCCCACTTGACTTAGC 212552 ||||||||||| || |||||||| Sbjct 215 TCACAACTTCCCTCTAGACTTAGC 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786579953029560