Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq900588 551 6e-152 seq94777 354 9e-93 seq174834 149 7e-31 seq542521 91.5 2e-13 >seq900588 Length=4557 Score = 551 bits (610), Expect = 6e-152 Identities = 714/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| |||||| ||||| | ||| | || ||||| ||||| || |||||||| Sbjct 3009 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 3067 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 3068 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 3127 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 3128 TATTGATGGTATTCGCGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 3187 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 ||||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 3188 TGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 3247 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || || | || |||||||| ||||| || |||||||| || || || || | ||||| Sbjct 3248 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTT 3307 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 3308 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 3367 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 171093 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 3368 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 3427 Query 171094 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 171153 | || || | ||||| || || |||||||||||||| |||| ||||| ||||| Sbjct 3428 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 3487 Query 171154 GTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATAT 171213 |||||||| ||| | || ||||| ||||| |||||||| || ||||| || ||||| || Sbjct 3488 TTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACAT 3547 Query 171214 GGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGT 171273 | ||||||||| ||| | ||||| ||| || |||||||| ||||| ||||| | || Sbjct 3548 GTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 3607 Query 171274 GACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTT 171333 || ||| | | ||||| || || ||||| || || | || | || || || || Sbjct 3608 AACCTCTAGTTTGATCAGGGAAACTACTGAAAATGAATCTGCTAATGAGGGTTACAAATT 3667 Query 171334 CGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAAT 171393 || ||||| ||||| || ||||| ||||| ||||||||||| || || || ||||||| Sbjct 3668 TGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAAT 3727 Query 171394 CTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCC 171453 |||||| ||||| ||||||||||||||||| |||||||||||| | |||| | || Sbjct 3728 CTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCC 3787 Query 171454 TGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGG 171513 |||||| | | ||||| || || | ||||| |||| ||||| |||||||| || || Sbjct 3788 TGTAGTAGGAATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGG 3847 Query 171514 ATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGA 171573 ||||| ||||||||||| || || ||| | || || | || |||| || Sbjct 3848 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGGGCTGA 3907 Query 171574 TGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTT 171633 | | | ||| | || |||||||| |||||||| ||||| ||| | ||||| |||||||| Sbjct 3908 TATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTT 3967 Query 171634 CCCACTAGACCTAGCATCTGCTGA 171657 ||| |||||| |||| ||| ||| Sbjct 3968 CCCTCTAGACTTAGCTGCTGTTGA 3991 >seq94777 Length=2712 Score = 354 bits (392), Expect = 9e-93 Identities = 692/1026 (67%), Gaps = 21/1026 (2%) Strand=Plus/Plus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| |||||| || || |||||||| || | ||||||||||| || || || || Sbjct 1078 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 1137 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 ||||||||||| | || | || |||||||| ||| || ||||| || || || ||| Sbjct 1138 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 1197 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 || || ||||| | ||| || ||| | || || || || ||||| |||||||| Sbjct 1198 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAGTT 1257 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 || || |||| || | | | || | | ||| | |||||||| || || |||||| Sbjct 1258 TCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACAA 1317 Query 172047 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 172106 |||||| || || |||| ||||||||| || ||||||| |||||||| | || || Sbjct 1318 GGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGG 1377 Query 172107 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 172166 | |||| ||| |||||||||||| | | || ||||| |||| | |||| | Sbjct 1378 GCTTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTG 1437 Query 172167 CGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTA 172226 || ||||| || ||| | ||||||| | ||||| || || | || || Sbjct 1438 CGGCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCGGTATTCCTT 1497 Query 172227 ATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATC 172286 || |||||| | || || | |||||||||| || || ||||| || ||||| || Sbjct 1498 ATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATA 1557 Query 172287 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 172346 ||||| | || | ||| | || || || || ||| || | || |||||||||||| Sbjct 1558 TTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 1617 Query 172347 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 172406 ||||| || || || || | || | || | ||||| || || ||||| ||||| ||| Sbjct 1618 ATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTA 1677 Query 172407 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 172466 | ||||| | | ||| | || ||| ||| | | || Sbjct 1678 GAAAACACTCTATTTGAGG------------ACGGTGATGGT---------GCAAATACC 1716 Query 172467 TTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGA 172526 ||| | || || | || || || | |||||||||||| ||| | ||||||||| | Sbjct 1717 TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGC 1776 Query 172527 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 172586 || ||||| || || |||||| | || ||||| || ||| | | ||||| ||| ||||| Sbjct 1777 TTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 1836 Query 172587 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTT 172646 | || ||||| |||| ||| | |||| |||| || | || || | || || Sbjct 1837 CTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTG 1896 Query 172647 AACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTT 172706 ||| | | || || |||||||| || || || || | ||||| ||||| || || || Sbjct 1897 AACTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTC 1956 Query 172707 GAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 172766 || || |||||||| || || |||||| | || || ||||| | || |||||| || || Sbjct 1957 GAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCT 2016 Query 172767 GTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCA 172826 ||||| || ||||| || || | ||||| || || || | ||||| || ||||| Sbjct 2017 CAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCT 2076 Query 172827 CTATAA 172832 || ||| Sbjct 2077 CTTTAA 2082 >seq174834 Length=1002 Score = 149 bits (164), Expect = 7e-31 Identities = 413/625 (66%), Gaps = 9/625 (1%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| |||||| || | |||||| | || | ||||||| ||| || || || || Sbjct 623 GATGACTGGTTACGAAGGGGCCGTTTCATTTTTGTAGGATGGTATGGCCTATTGCTCTTT 564 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA--GGAACTACTTTCGTGACCTCAT 171924 |||| |||||| | | | || |||||||| || ||||| |||| || || || | Sbjct 563 CCTTATGCTTATTTCTCTTTAGG-GGTTGGTTTTTACAGGAACAACTTATGTAACTTCTT 505 Query 171925 GGTACACACATGGTATTGCATCCTCATATCTT-GAGGGAGCAAACTTTTTAACTGCAGCA 171983 ||| || ||||| | ||| || ||| | |||| | || || ||||| || || Sbjct 504 TGTATACTCATGGACTGGCAAGTTCCTATTTGCGAGGTTGTAAT-TTCTTAACAGCGACA 446 Query 171984 GTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCA 172043 | || || || || | | | || | | ||| | |||||||| || || ||| Sbjct 445 ATTTCTACCTTTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCA 386 Query 172044 CAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACAT 172103 || | |||| || || |||| ||||||||| || ||||||| ||||||||| | || Sbjct 385 CATGTAGATTTTAGTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCACTCCAC 326 Query 172104 GGAGTCTTTGGACTCATAGGTTTCATGCTTAGAC-AGTTTGAGATTGCAGGACTTGTTGG 172162 || | |||| ||| ||||| |||||| ||| || | |||| ||| | |||| Sbjct 325 GGGCT-TTTGCACTAATAGGGTTCATG-TTACACCAACTTGAACGTGCTCGGTCTGTTCA 268 Query 172163 GATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTT 172222 | ||| || ||| | ||||||| | | ||||| | || | || Sbjct 267 ATTGNNNNNTTATAATGCAATCTCATTCTCTGGTCTAATTGCTATTTTTGTTTCTGTATT 208 Query 172223 TCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGC 172282 ||| | |||||| | || || || |||||||||| ||||| |||||||| ||||| Sbjct 207 TCTTAGTTATCCACTCGG-CAATATGGTTGGTTCTTTGCACCGAGTTTTGGTGTAGCAGC 149 Query 172283 AATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 172342 ||| ||||| | || | ||| | || || || || ||| || | |||| |||||| Sbjct 148 AATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAATCTATTTCA 89 Query 172343 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 172402 ||||||||| | || || || | || | || || ||||| | || ||||| |||| Sbjct 88 TATGATGGGATTTGCCGGAGTATTAGGCGTGGCTTTTCTATGCACTATTCATGGAGCAAA 29 Query 172403 AGTACAGAACACATTGTATGAAGAC 172427 |||| ||||| | | ||| ||| Sbjct 28 CATACAAAACACTCTATTTGAGGAC 4 >seq542521 Length=235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171843 GGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA 171902 ||||||||||| || || || || ||||||||||| | || | || |||||||| | Sbjct 8 GGATGGTCTGGCCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACA 67 Query 171903 GGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGA 171962 || || ||||| || || || ||||| || ||||| | | | |||||| | || || Sbjct 68 GGGACAACTTTTGTAACTTCTTGGTATACCCATGGATTGGAAAGTTCATATTTGGAATGA 127 Query 171963 GCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG 172022 || || ||||| ||||||| || || |||| || | | | || | | ||| Sbjct 128 TGTAATTTCTTAACCACAGCAGTTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTG 187 Query 172023 TTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAA 172070 | |||||||| || || ||| |||| ||| || || |||| |||| Sbjct 188 CTACTATGGGGGCCAGAAGCATAAGGGGATTTTACTCGTTGGTGTCAA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555456773627640