Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq60244 91.5 2e-13 seq957357 89.7 6e-13 >seq60244 Length=9325 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||||||||| |||||||| | || || |||||||| || ||||| Sbjct 747 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 806 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| || || ||||| || ||||| || |||| ||| || || || |||||| Sbjct 807 CCCGGCATGAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 866 Query 33424 ATTCCTTCTACTGCA-GCAAAGGC 33446 || || || || ||| || ||||| Sbjct 867 ATGCCCTCGAC-GCAGGCGAAGGC 889 >seq957357 Length=1670 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 |||||| ||||||| || | ||| |||| ||| | || | ||||| |||| || || Sbjct 1516 TCCTCCTTGATCTACATAACGAGCAGTGTCATTGAAGACACGTAACATAGGAACTATCCC 1457 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || |||||||| ||| | |||||||| || || || Sbjct 1456 ATTGGATGTTCCATTTGTTCCTCGAATATAGCTCCCAGTAGCACGAATGTTGTGAACAGA 1397 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| ||||| || || ||| || | || ||| || | || |||||||| Sbjct 1396 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTGAGAGTATCATAGAT 1337 Query 63551 ACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| ||||||||||| ||||| | || |||||||| Sbjct 1336 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 1295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606766917377160