Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_007145.2
Length=37639
Score E
Sequences producing significant alignments: (Bits) Value
seq50522 118 2e-22
seq50588 114 3e-21
>seq50522
Length=209
Score = 118 bits (130), Expect = 2e-22
Identities = 142/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 5207 GCAACTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAGAAGGACGGCATCCAGCTCA 5266
|||| ||||||||| |||||||| | |||| || |||||||| || | ||||| |
Sbjct 1 GCAATTTCCGCAACCTGTTCATGCATTCGCCCAATGGCAAGAAGGATGGATTGCAGCTGA 60
Query 5267 TCCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTCTTCAACATCAAGAACGTGACGCGCG 5326
|||| | ||| || || || ||||| |||||| | ||||||| ||||| || |
Sbjct 61 TCCCGATCAGCGAAGTGGCGGCCAAGGATGAGTTCACCGGCATCAAGCGTGTGACTCGTG 120
Query 5327 ATGACCTGCTCGCCGCGCACCGCGTGCCGCCGCAGTTGCTTGGCATCGTGCCGAGCAATT 5386
||||| | || ||||||| ||| | || |||||| |||| |||||||||||| |||
Sbjct 121 ATGACATTCTGGCCGCGCTGCGCATACCCCCGCAGCTGCTGGGCATCGTGCCGCAGAATG 180
Query 5387 CGGGCGGGTTCGG 5399
| || || |||||
Sbjct 181 CCGGTGGCTTCGG 193
>seq50588
Length=314
Score = 114 bits (126), Expect = 3e-21
Identities = 139/185 (75%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 5048 TGCACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACG 5107
|||| ||||| ||| ||||||||| | ||| ||||||| |||| ||| ||| ||||
Sbjct 132 TGCAGTCGGCGCTGCTCAACGAATCGGCCACGTTGTTCCGCCGCAGGTACTACACCAACG 191
Query 5108 GCAGCCACGCCGGCTTCATCCTGTACATGACCGA--CGCCG-CGCAGAAGCAGGACGACG 5164
|| || ||||| || ||||| ||||||||||| ||| | || || ||| | ||||
Sbjct 192 GCTCGCATGCCGGGTTTATCCTCTACATGACCGATCCGCAGCCGGAG-GGCATG--GACG 248
Query 5165 TGGACAACATGCGCGACGCGCTGAAGAACGCGAAGGGGCCTGGCAACTTCCGCAACGTGT 5224
||||| | |||| || |||||| | || || ||||| ||||| ||||||||| |||
Sbjct 249 TGGACGCCTTGCGTGAAGCGCTGCGGGACTCGCGTGGGCCGGGCAATTTCCGCAACCTGT 308
Query 5225 TCATG 5229
|||||
Sbjct 309 TCATG 313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117354216090962
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |