Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007145.2 Length=37639 Score E Sequences producing significant alignments: (Bits) Value seq50522 118 2e-22 seq50588 114 3e-21 >seq50522 Length=209 Score = 118 bits (130), Expect = 2e-22 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 5207 GCAACTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAGAAGGACGGCATCCAGCTCA 5266 |||| ||||||||| |||||||| | |||| || |||||||| || | ||||| | Sbjct 1 GCAATTTCCGCAACCTGTTCATGCATTCGCCCAATGGCAAGAAGGATGGATTGCAGCTGA 60 Query 5267 TCCCCGTGTCCGAGGTCGCCGCGAAGGACGAGTTCTTCAACATCAAGAACGTGACGCGCG 5326 |||| | ||| || || || ||||| |||||| | ||||||| ||||| || | Sbjct 61 TCCCGATCAGCGAAGTGGCGGCCAAGGATGAGTTCACCGGCATCAAGCGTGTGACTCGTG 120 Query 5327 ATGACCTGCTCGCCGCGCACCGCGTGCCGCCGCAGTTGCTTGGCATCGTGCCGAGCAATT 5386 ||||| | || ||||||| ||| | || |||||| |||| |||||||||||| ||| Sbjct 121 ATGACATTCTGGCCGCGCTGCGCATACCCCCGCAGCTGCTGGGCATCGTGCCGCAGAATG 180 Query 5387 CGGGCGGGTTCGG 5399 | || || ||||| Sbjct 181 CCGGTGGCTTCGG 193 >seq50588 Length=314 Score = 114 bits (126), Expect = 3e-21 Identities = 139/185 (75%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 5048 TGCACTCGGCCTGGCTGAACGAATCGTCGACGCTGTTCCGGCGCAAGTATTACGAGAACG 5107 |||| ||||| ||| ||||||||| | ||| ||||||| |||| ||| ||| |||| Sbjct 132 TGCAGTCGGCGCTGCTCAACGAATCGGCCACGTTGTTCCGCCGCAGGTACTACACCAACG 191 Query 5108 GCAGCCACGCCGGCTTCATCCTGTACATGACCGA--CGCCG-CGCAGAAGCAGGACGACG 5164 || || ||||| || ||||| ||||||||||| ||| | || || ||| | |||| Sbjct 192 GCTCGCATGCCGGGTTTATCCTCTACATGACCGATCCGCAGCCGGAG-GGCATG--GACG 248 Query 5165 TGGACAACATGCGCGACGCGCTGAAGAACGCGAAGGGGCCTGGCAACTTCCGCAACGTGT 5224 ||||| | |||| || |||||| | || || ||||| ||||| ||||||||| ||| Sbjct 249 TGGACGCCTTGCGTGAAGCGCTGCGGGACTCGCGTGGGCCGGGCAATTTCCGCAACCTGT 308 Query 5225 TCATG 5229 ||||| Sbjct 309 TCATG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117354216090962