Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq60244 87.8 2e-12 >seq60244 Length=9325 Score = 87.8 bits (96), Expect = 2e-12 Identities = 307/469 (65%), Gaps = 23/469 (5%) Strand=Plus/Plus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||||||||| || || || || || || || |||||||||| || || ||| | Sbjct 458 CTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTC 517 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| | ||||| || || | | |||| | |||||| | |||||| | | | | ||| Sbjct 518 CATCCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCATGAGCAG 577 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAACATAG 119820 || |||||||| ||||||||||| | || |||| | | || |||||||| | | | Sbjct 578 GCGGTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGC-CGTTCATGCCGACGAGCG 636 Query 119821 CGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAAACATAC 119880 || || | || | | | ||| ||| | |||||||| || || || | || | Sbjct 637 CGCAGGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTCCACGGCCTC-GGAGACGATC 695 Query 119881 TC-AACACCTTGGTCTTGGAGAGCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGA 119939 || || || || || | |||||| | | ||| | | |||| || Sbjct 696 TCGAAGACGCGGGACTCGTCCAGCTTG--CCGCGCAGGA-------TGTCGTAGAGGAGG 746 Query 119940 CAAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAG 119999 || || |||||| ||| || || ||||| | ||| ||||| |||||| | | || | | Sbjct 747 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 806 Query 120000 CCGGGTA-GAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTA-CCAG 120057 || || | |||| || || || || | || |||| || ||| || | || | Sbjct 807 CCCGGCATGAGCCCC------CGCTTC-TTCAGCCAGAAGATGGC-GCAGAAGGAGCCCG 858 Query 120058 aaaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAA 120106 | || |||| ||| |||||| || || ||||| ||||| |||||||| Sbjct 859 AGAAGAAGATGCCCTCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAA 907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466229736504720