Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq957357 93.3 1e-13 seq1980960 91.5 4e-13 >seq957357 Length=1670 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||||||||| |||| ||| || || ||| | |||||| | || | Sbjct 1313 ATGAAAGATGATAGCATCGAGGGAATCTATGATACTCTCAAGGAATGTGCTGTCATAAGC 1372 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | ||||| ||||||| || | || || || Sbjct 1373 AAATCTGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCTACTG-GGAGCTATAT 1431 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || |||||| | ||||| ||| | ||||| || | | || Sbjct 1432 TCGAGGAACAAATGGAACATCCAATGGGATAGTTCCTATGTTACGTGTCTTCAATGACAC 1491 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 1492 TGCTCGTTATGTAGATCAAGGAGGAGGCAAGAG-AAAGGG 1530 >seq1980960 Length=13069 Score = 91.5 bits (100), Expect = 4e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| |||||| || ||||| || | ||| || || | | Sbjct 1677 TGCTTTCTTGTCTGCATGAAAGACGATAGTATTGAGGGAATTTATGATACTCTCTCGGAA 1736 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 |||||| || ||| || || || |||||||| || || ||||| || || || Sbjct 1737 TGTGCTTCCATAAGCAAATCAGCTGGAGGGATTGGTGTTTCAATTCACAACGTCCGGGCT 1796 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | |||||||||||| || ||| ||| || ||||| | ||||||||||| || Sbjct 1797 ACTGG-CAGTTACATTCGTGGAACAAATGGAACTTCTAATGGAATTGTTCCCATGCTACG 1855 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || | | ||||| | || || || || |||||||| ||| | ||||| Sbjct 1856 TGTTTTCAATGACACTGCACGCTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 1909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1268654278218582