Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq55597 277 5e-70 seq2072468 93.3 1e-14 >seq55597 Length=320 Score = 277 bits (306), Expect = 5e-70 Identities = 252/318 (79%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 20416 TTCCTGCGCGCGATCGAGGACGGACGCATTCAACCCGGCTCCGTGCTAATCGTCGAAGGA 20475 |||||| || || || || ||||| || | |||| || ||||| ||||| || || Sbjct 320 TTCCTGGCGGCCATAGATGAGGGACGGATCCCCTCCGGGTCGGTGCTGATCGTGGAGGGC 261 Query 20476 CTTGACCGCCTGAGCCGTGCAGAGCCAATTCAGGCTCAGGCACAGCTTGCGCAGATCATC 20535 || |||||||| ||||| || ||||| |||||||||||||| ||| | |||||||||||| Sbjct 260 CTGGACCGCCTCAGCCGCGCCGAGCCCATTCAGGCTCAGGCGCAGTTGGCGCAGATCATC 201 Query 20536 AACGCCGGCATCACAGTTGTAACAGCAAGCGATGGTCGCGAGTACAACCGTGAGCGACTG 20595 |||||||||||||| || || || || |||||||| ||||| |||||| | | |||| Sbjct 200 AACGCCGGCATCACCGTGGTGACCGCCAGCGATGGCCGCGAATACAACAGGGCTGGACTC 141 Query 20596 AAAGCACAGCCGATGGATCTCGTGTACAGCCTACTCGTAATGATCCGGGCGCATGAAGAA 20655 || || ||||| ||||||||||| |||||||| || || |||||||||||||| ||||| Sbjct 140 AAGGCCCAGCCCATGGATCTCGTCTACAGCCTCCTGGTGATGATCCGGGCGCACGAAGAG 81 Query 20656 TCAGACACGAAAAGCAAGCGCGTGAAAGCAGCAATTCGGCGGCAATGCGAGGGGTGGGTT 20715 || || || || |||||||||||| || ||||| | ||||||||| |||| ||| | Sbjct 80 TCCGATACCAAGAGCAAGCGCGTGCGCGCCGCAATCCCCCGGCAATGCCAGGGCTGGATC 21 Query 20716 GCAGGAACATGGCGCGGG 20733 || || || ||||||||| Sbjct 20 GCCGGCACTTGGCGCGGG 3 >seq2072468 Length=291 Score = 93.3 bits (102), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 27961 AGCGCAGTCATCGGATAGCGCAGCTTGCGGTCGATGATTTCGGTG--ATCG-CCTCGATG 28017 |||||||| ||||||||||||||||| |||||||| || ||| | || || | | Sbjct 60 AGCGCAGTATTCGGATAGCGCAGCTTGGCGTCGATGACCTCTGTGCAACCGGCCACCAG- 118 Query 28018 TTCACCGTGTCGGCGATCAGCGAGCTGTGCGCATTCGGCGTAATGCGCCGCACGCGCACC 28077 || |||||||||||| | ||| | |||||||| | ||| |||||||| | | Sbjct 119 --CATGGTGTCGGCGATCTTGTTGGTGTTCTGGTTCGGCGTCAGGCGGCGCACGCGTATC 176 Query 28078 AGCCAGCCGGATTTCGCACTCGGCAGCTCGATCCGATGGGAACGCTCGTACAGCGACGTC 28137 ||||||| | | || ||||| ||||| ||| | || |||||||| ||| || Sbjct 177 TGCCAGCCAGTGGTGGCGTCCGGCAAATCGATGCGAAGCGAGCGCTCGTAGCGCGTGGTG 236 Query 28138 GTCTTGCCGTC 28148 ||||||||||| Sbjct 237 GTCTTGCCGTC 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139878760053316