Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq30859 316 6e-82 seq3985 150 5e-32 >seq30859 Length=501 Score = 316 bits (350), Expect = 6e-82 Identities = 256/310 (83%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 35442 TGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCCA 35501 ||||||| ||| ||||||| ||||| |||||||| |||||| |||||||||| |||| Sbjct 192 TGCAGGTCAAGCTGCTCGATCCGCGCTTCGGCGACAGCTGGCCGCTGCCGGCCTACGCCA 251 Query 35502 CCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACTGGAGGCGCCGATGACGTTGCAGC 35561 |||||||||| || |||||||||||||| ||||| ||||| | || |||| |||||| Sbjct 252 CCGAAGCCAGCGCCGGCATGGACCTGCGCGCCGCGCTGGATACCGCGCTGACCCTGCAGC 311 Query 35562 CGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCAGCTGT 35621 ||||||| | |||||| | ||||||||| | || ||||| | ||||| ||| | |||| Sbjct 312 CGGGCGACACTGCGCTGGTGCCCAGCGGCCTGGCCATCCACATCGCCGATCCGAACCTGT 371 Query 35622 GCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGGCAACG 35681 |||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||| Sbjct 372 GCGCGGTGATCCTGCCGCGCTCGGGGCTGGGCCATCGCCATGGCATCGTGCTCGGCAACG 431 Query 35682 GTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGGAATCGCG 35741 | ||||| || ||||| || || |||||||| || || |||||||| |||||| || | Sbjct 432 GCACCGGTCTGATCGACGCCGACTACCAGGGCCCGCTGCTGATCAGCGTCTGGAACCGTG 491 Query 35742 GCCGCGAGGC 35751 | |||||||| Sbjct 492 GTCGCGAGGC 501 >seq3985 Length=234 Score = 150 bits (166), Expect = 5e-32 Identities = 138/173 (80%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 35734 GAATCGCGGCCGCGAGGCCTTCACCATCGAGCCGGGCGACCGGATTGCGCAGCTGGTGAT 35793 ||| || || ||||||||||||||||||||||||||||| || || |||||||||||| | Sbjct 234 GAACCGTGGTCGCGAGGCCTTCACCATCGAGCCGGGCGATCGCATCGCGCAGCTGGTGGT 175 Query 35794 CCTGCCGGTCGTGCGCGTAGGCTTGCGAGTGGTGGACACTTTCGTCGACAGCGCGCGCGG 35853 ||||| | | ||||| || ||| |||||||| |||||| |||||||| ||| || Sbjct 174 GGTGCCGATTGCCCGCGTCAGCCTGCAGGTGGTGGATACTTTCACCGACAGCGTGCGGGG 115 Query 35854 CGCGGGTGGATTCGGTCACACCGGCGTGCGCTGACTGGCTAAGTCAGATGAGC 35906 ||||||||||||| || ||||| ||||| |||| || | || ||||||| Sbjct 114 AACGGGTGGATTCGGCCATACCGGGGTGCGTTGACGGGGGACATC-GATGAGC 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145456058108010