Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq18201 295 2e-75 seq30077 84.2 5e-12 >seq18201 Length=11482 Score = 295 bits (326), Expect = 2e-75 Identities = 424/590 (72%), Gaps = 6/590 (1%) Strand=Plus/Plus Query 943 GGTCACGGTATTGGTAAATCCGCATTCATCTCAATGCTGATCAACTGGGGCATGTCCACT 1002 ||||||||||| || || ||||| | ||| ||||| | | |||||| ||| ||| Sbjct 243 GGTCACGGTATCGGCAAGTCCGCGCTGATCGGCATGCTCACCGGCTGGGGGATGGACACC 302 Query 1003 TGCGAGGATTGTAAGGTCGTGGTGACCGCCAACACCGACAACCAGCTACGAACGAAGACC 1062 |||||||| || |||||||||||||||||||||| |||||| || ||||||||| Sbjct 303 TGCGAGGACTGCCGCATCGTGGTGACCGCCAACACCGAGGGCCAGCTGCGCACGAAGACC 362 Query 1063 TGGCCGGAAATTATCAAGTGGTCGAACCTTGCTATCACGAAAGACTGGTTTACCTGTACC 1122 ||||||||||| |||||| | ||| | ||||| | |||||| | | || || Sbjct 363 TGGCCGGAAATCTCGAAGTGGCGGCGCCTGACCATCACCGAGCACTGGTGGAAC-GTGCC 421 Query 1123 G-CTACCGCGATGTACAGCAATGACCCTGGGCACGACAAGCGGTGGCGAGCTGACGCAAT 1181 | | | |||| ||| || || || || | ||| ||| | ||||| || ||||| | Sbjct 422 GGCCATGTCGATCTACTCGAACGAGCCAGGCCGCGAGAAGAGCTGGCGCGCCGACGCCAC 481 Query 1182 CCCCTGGTCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAACGCAT 1241 |||||| ||||||||||| ||||| |||||||| || |||||| || |||| ||||| Sbjct 482 GCCCTGGAGCGAGCACAACACCGAGGCGTTCGCCGGCCTGCACAACAAGGGCAAGCGCAT 541 Query 1242 CATCGTGGTATTCGACGAAGCATCCAACATTGCCGATCTGGTGTGGGAGGTAGCAGAGGG 1301 |||||| | | |||||| || || || || ||||| ||| ||||| || | || || Sbjct 542 CATCGTCATCTACGACGAGGCCTCGAAGATCGCCGACAAGGTCTGGGAAGTCACCGACGG 601 Query 1302 TGCGCTGACGGACGAAGACACTGAGATTATCTGGGTGGCATTCGGAAACCCTACACGTAA 1361 || || || ||||| ||||| || || |||||| | || ||||| ||||| || | Sbjct 602 CGCACTTACCGACGAGGACACCGAAATCATCTGGATCGCCTTCGGGAACCCGACGCAGTC 661 Query 1362 CACCGGGCGTTTCCGCGAATGTTTCCGCAAATATAAACACCGCTGGAAAACTGCG-CAGA 1420 ||| || || |||||||| || |||||| || |||| |||| || ||| || | Sbjct 662 CACAGGCCGCTTCCGCGAGTGCTTCCGCCGGTACCGCCACCTCTGGGTGAC-GCGCCACA 720 Query 1421 TTGACAGCCGGACGGTGGAAGGCACTAACAAACAGCAGTTGCAGAAATGGGTTGATGAC- 1479 | |||||||| || || || ||||| ||||| ||| | || | | | | || ||| Sbjct 721 TCGACAGCCGCACCGTCGAGGGCACGAACAAGCAGTACCTGGACGAGTTCG-TGGCGACG 779 Query 1480 TACGGGGAAGGCAGCGACTTCGTTAAAATCCGTGTGCGCGGCATATTCCC 1529 |||| || | ||||||| |||| || |||| ||||||||| | ||||| Sbjct 780 CACGGCGAGGACAGCGACATCGTCAAGGTCCGCGTGCGCGGCCTGTTCCC 829 Score = 96.9 bits (106), Expect = 8e-16 Identities = 199/294 (68%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 6556 ACTGGCTGATTTGAACGGCAATACCGCCGAATTCCGCCTGTCTGAAGACCGCGCATTTAT 6615 |||||| | |||||||||| |||| ||||||||||| |||||| || || || Sbjct 6324 ACTGGCGAAGCTGAACGGCAACGAAGCCGCCTTCCGCCTGTCGGAAGACGAAGCCTTCAT 6383 Query 6616 TGAAGCGATGAATCAGCAGATGGCGCAGACGC--TGTTTTATGGTGATTCCAGCGTTAAC 6673 || |||||||| ||| ||||| | ||| |||| || ||| | | || || Sbjct 6384 CGAGGCGATGAACCAGACCATGGCC--GGCGCCATGTTCTACGGTAACCCGGGCACCGAC 6441 Query 6674 CCTCAGCAGTTTATGGGACTGTCCTCCCGCTATTCCAGTCTGTCTGCGGGTAATGCTCAG 6733 || | ||||| |||| ||| |||| || | ||| || || || | ||| Sbjct 6442 CCGCGCCAGTTCCTGGGCCTGCAAACCCGTTACAGCTCGCTGAGCGCTGGGAACGGCCAG 6501 Query 6734 AACATCATTGATGCTGGTGGCACGGGTACAGATAACACCTCAATCTGGTTAGTGGTGTGG 6793 |||||| | || || |||||||| || || | |||||||| |||| | ||||||||| Sbjct 6502 AACATCCTCGACGCCGGTGGCACCGGCACCAACAACACCTCCATCTACCTGGTGGTGTGG 6561 Query 6794 GGCGAAAACACCGTGCATGGCATCTTCCCGAAAGGGAAGAAGGCTGGCATCCAG 6847 || || |||||||| || |||||||| || ||| |||||| | ||| Sbjct 6562 GGTGAGAACACCGTCTTCTGCCCGTTCCCGAAGGGTTCGAAAGCTGGCCTGCAG 6615 >seq30077 Length=415 Score = 84.2 bits (92), Expect = 5e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 2864 GCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922 |||||| ||||||||||||||| ||||||||||||||| |||||| |||| |||||||| Sbjct 338 GCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTA 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121926539342292