Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq72279 131 1e-25
seq271959 91.5 1e-13
seq376727 86.0 4e-12
seq95629 86.0 4e-12
>seq72279
Length=5110
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| ||||||||| |||| || ||||||||
Sbjct 4267 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 4208
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 4207 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4173
Score = 96.9 bits (106), Expect = 2e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |
Sbjct 2279 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 2220
Query 20007 GGTAATATTTAGCCTT 20022
| |||||||||||
Sbjct 2219 GCCTGTATTTAGCCTT 2204
>seq271959
Length=329
Score = 91.5 bits (100), Expect = 1e-13
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014
||||||| ||||||| |||||||||||||||||||||||||||||||||| || |||
Sbjct 74 TCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCTGTAT 15
Query 20015 TTAGCCTT 20022
||||||||
Sbjct 14 TTAGCCTT 7
>seq376727
Length=304
Score = 86.0 bits (94), Expect = 4e-12
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003
|||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||
Sbjct 57 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCT 1
>seq95629
Length=7091
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | ||||| |||||||| |||||| || ||||| ||||||| |
Sbjct 3315 CCACCACGCAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGTATATTATAATCAGCC 3374
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| ||| |||| || | || ||||||||||| || || || || || | |||
Sbjct 3375 AAAGAACGCCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCATCTGCTGGTCAGCCGGG 3434
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTG-CTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| || || || | | | ||| || | ||||||||| | | || || || |||||
Sbjct 3435 ATACCCTCCTTAT-CTTGATTCTTGGCCTTCACATTATCAATGGTGTC-GGGCTCTCAAC 3492
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || || || || | || ||||| || ||||||||
Sbjct 3493 CTCTAGGGTTATGGTCTTCCCAGTGAGAGTCTTCACAAAAATCTGCAT 3540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 326464856952731
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |