Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq72279 131 1e-25 seq271959 91.5 1e-13 seq376727 86.0 4e-12 seq95629 86.0 4e-12 >seq72279 Length=5110 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 4267 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 4208 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4207 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4173 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 2279 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 2220 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 2219 GCCTGTATTTAGCCTT 2204 >seq271959 Length=329 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 19955 TCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATAT 20014 ||||||| ||||||| |||||||||||||||||||||||||||||||||| || ||| Sbjct 74 TCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTCGCCTGTAT 15 Query 20015 TTAGCCTT 20022 |||||||| Sbjct 14 TTAGCCTT 7 >seq376727 Length=304 Score = 86.0 bits (94), Expect = 4e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||| Sbjct 57 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCT 1 >seq95629 Length=7091 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||||| |||||||| |||||| || ||||| ||||||| | Sbjct 3315 CCACCACGCAGACGGAGGACCAAGTGAAGAGTAGACTCCTTCTGTATATTATAATCAGCC 3374 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 ||| ||| |||| || | || ||||||||||| || || || || || | ||| Sbjct 3375 AAAGAACGCCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCATCTGCTGGTCAGCCGGG 3434 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTG-CTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || || | | | ||| || | ||||||||| | | || || || ||||| Sbjct 3435 ATACCCTCCTTAT-CTTGATTCTTGGCCTTCACATTATCAATGGTGTC-GGGCTCTCAAC 3492 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || | || ||||| || |||||||| Sbjct 3493 CTCTAGGGTTATGGTCTTCCCAGTGAGAGTCTTCACAAAAATCTGCAT 3540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326464856952731