Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq138792 125 6e-24 seq878454 116 3e-21 seq839203 114 1e-20 seq218242 98.7 8e-16 seq1978033 95.1 1e-14 seq138594 95.1 1e-14 seq948143 86.0 5e-12 seq221428 86.0 5e-12 seq95597 84.2 2e-11 seq895220 82.4 6e-11 >seq138792 Length=3226 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| | || || || |||||||| | || |||||||| || Sbjct 79 ATGCAAATCTTTGTAAAGACCCTCACGGGCAAGACCATCACATTGGAGGTGGAGTCTTCG 138 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| ||| ||| ||||| ||||| ||||| || ||||| Sbjct 139 GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 198 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| || || ||| || ||||| Sbjct 199 CAGCGTCTCATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCTTGGCGGACTACAAC 258 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || || ||||| Sbjct 259 ATTCAGAAGGAGTCCACCCTTCACTTGGTGCT 290 >seq878454 Length=5435 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || |||||||| ||| Sbjct 606 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 665 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| ||| ||| || || ||||| || || || ||||| Sbjct 666 GACACCATCGACAACGTGAAGGCAAAGATCCAGGATAAGGAAGGCATCCCCCCGGACCAG 725 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| ||| || || || Sbjct 726 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGGCTGACTATAAC 785 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | ||||| ||||| | ||||| Sbjct 786 ATCCAGAAGGAGTCCACTCTCCACCTGGTGCTCAGGCTTCGTGGAGG 832 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||||| || Sbjct 834 ATGCAGATTTTCGTGAAGACCCTCACAGGCAAGACCATCACCTTGGAGGTGGAGTCCTCG 893 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || || || ||||| Sbjct 894 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 953 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||||||||| || | || |||| ||||| ||| |||||||| Sbjct 954 CAGCGACTTATCTTTGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCAGATTACAAC 1013 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 1014 ATCCAGAAGGAGTCCACCCTTCACCTGGTGCT 1045 >seq839203 Length=7618 Score = 114 bits (126), Expect = 1e-20 Identities = 157/215 (73%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||||| || Sbjct 1136 ATGCAGATTTTCGTGAAGACCCTCACCGGCAAGACCATCACTCTTGAGGTTGAGTCTTCC 1077 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || |||| || | || ||||| || || || || || ||| Sbjct 1076 GACACGATCGA--CAATGTCAAAGCGAAGATCCAG-GACAAGGAGGGCATCCC-CCGGAC 1021 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||||||| | || ||||| ||||| ||| | || |||| |||||| | | ||||||| Sbjct 1020 CAACAGCGGTTGATCTTTGCTGGCAAGCAACTTGAGGATGGTCGCACCCTAGCCGATTAC 961 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || |||| || Sbjct 960 AACATCCAGAAAGAGTCCACTCTTCACCTAGTTCT 926 >seq218242 Length=2478 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || |||||||||||| Sbjct 1014 ATGCAGATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTGGAGTCGTCT 1073 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| || ||| ||||| || || || || || |||| Sbjct 1074 GACACAATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 1131 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| ||||| || | || |||| | || | | || |||| Sbjct 1132 AGCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACCCTTGCTGACTACA 1191 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 | || || || || ||||| || || Sbjct 1192 ACATCCAGAAGGAGTCCACCCTTCA 1216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || ||||| || || Sbjct 1242 ATGCAGATCTTCGTCAAGACGTTGACTGGCAAGACCATCACCCTGGAGGTGGAATCATCC 1301 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 1302 GACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 1361 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| | || | | || ||||| Sbjct 1362 CAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGCAGGACCCTTGCTGACTACAAC 1421 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || ||||||| Sbjct 1422 ATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGCCTTCGAGGAGG 1468 >seq1978033 Length=13150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| |||| || ||||| ||| Sbjct 5055 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCT 5114 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| || | || || || || || ||||| Sbjct 5115 GACACGATTGACAACGTCAAGGCCAAGATCCAGGATATGGAGGGTATCCCGCCGGACCAG 5174 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| ||||| | | |||||||| Sbjct 5175 CAGCGATTGATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACCCTAGCTGATTACAAC 5234 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || | ||||| Sbjct 5235 ATCCAGAAAGAGTCTACCCTCCACCTGGTGCT 5266 >seq138594 Length=2879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || ||||||||||| Sbjct 251 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGTCGTCG 192 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 191 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 132 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || || | ||||| | | ||| ||||| Sbjct 131 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAAC 72 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 71 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 40 >seq948143 Length=1505 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || | ||||| | || ||||||||||| Sbjct 106 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACTATCACTCTTGAGGTGGAGTCGTCC 165 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 166 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 225 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || |||||||| || | || |||| ||||| | | || ||||| Sbjct 226 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTACAAC 285 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| || || | ||||| Sbjct 286 ATTCAGAAGGAGTCCACCCTTCACCTGGTGCT 317 >seq221428 Length=956 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||| ||| || || | || |||| || | ||||||||| || Sbjct 103 ATGCAGATTTTTGTAA-GACATTAACTTGGAAGACCATTACTCTTGAAGTGGAGAGCTCC 161 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| ||||| ||||| || ||| ||||| || |||||||| || || || Sbjct 162 TACACCATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGGATTCCTCCAGATCAG 221 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||| || | || | || |||| || || ||| |||| || Sbjct 222 CAGAGGCTTATCTTTGCAGGGAGGCAGCTGGAGGATGGGCGTACCTTGGCATATTATAAC 281 Query 25179 ATTCAAAAAGAATCCACGCTACAT 25202 || |||||||||||||| || ||| Sbjct 282 ATCCAAAAAGAATCCACTCTGCAT 305 >seq95597 Length=7948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||||||||| || ||||| ||||| | || ||||| ||||| || || || Sbjct 2407 GACAAGGAAGGGATTCCTCCGGACCAGCAGCGTTTGATATTTGCTGGCAAGCAGTTGGAG 2466 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| | | || ||||| ||||| || || || || || || || || || Sbjct 2467 GATGGACGCACACTTGCTGACTACAACATTCAGAAGGAGTCGACTCTTCACTTGGTCCTC 2526 Query 25212 AGGCTAAGAGGAGG 25225 ||||| || || || Sbjct 2527 AGGCTCAGGGGTGG 2540 >seq895220 Length=1325 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || || ||||||| | || || ||||||||| Sbjct 1057 ATGCAGATCTTTGTGAAGACGTTGACAGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 1116 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 1117 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1176 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || || | | || | | || ||||| Sbjct 1177 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGACTACAAC 1236 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 1237 ATCCAGAAGGAGTCCACCCTCCA 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422354220407315