Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_008376.2 Length=34683 Score E Sequences producing significant alignments: (Bits) Value seq29471 105 1e-18 >seq29471 Length=369 Score = 105 bits (116), Expect = 1e-18 Identities = 150/208 (72%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 32722 GCCGTTGGTAATGATGTTGCAAAAGCATTGGGGTACAGCCGGCCGCACGAAGCAATTTCA 32781 || || || ||||| |||||||| | | || || ||||| ||||||| | ||| Sbjct 358 GCGGTCGGAAATGACGTTGCAAAGTCTCTTGGATATGCGCGGCCATACGAAGC--TGTCA 301 Query 32782 AGTCAC--TGCA-GGGGGCGGTAACTTACCGCATCCTTACTAATGGAGGAGAGCAAACGG 32838 ||| |||| ||||||||||| |||||| ||||||| | || ||||| || | Sbjct 300 CCGCACATTGCAAGGGGGCGGTAAGTTACCGTGTCCTTACGGAAGGCGGAGAACAGGAAG 241 Query 32839 TGAAAGTTATCCCAGAAGGGGATATATACCGCTTGATCATTAAGGCGGCTGATCAGAGCA 32898 | || || || |||||||| ||||| ||| | |||||| | || ||||| ||||| |||| Sbjct 240 TCAAGGTCATTCCAGAAGGCGATATCTACAGGTTGATCGTGAAAGCGGCAGATCAAAGCA 181 Query 32899 AAAATCCGGAAATCAGACAAAAGGCGGA 32926 | || || | |||| | ||||||| || Sbjct 180 AGAACCCAGCGATCAAAGAAAAGGCAGA 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108128422554490