Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2009029 104 3e-17 seq16798 100 3e-16 seq1984824 96.9 4e-15 seq150389 96.9 4e-15 seq120958 96.9 4e-15 seq840999 95.1 1e-14 seq849692 93.3 5e-14 seq872117 91.5 2e-13 seq846929 91.5 2e-13 seq321966 91.5 2e-13 seq195841 89.7 6e-13 seq886600 84.2 2e-11 seq846723 84.2 2e-11 seq1988974 82.4 8e-11 seq843023 82.4 8e-11 seq60664 82.4 8e-11 >seq2009029 Length=2084 Score = 104 bits (114), Expect = 3e-17 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 243 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 184 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||| |||||||| |||||||| ||||||| Sbjct 183 TGGGTTCAAACCCCACTTCTGACAAAATATTATT 150 >seq16798 Length=3867 Score = 100 bits (110), Expect = 3e-16 Identities = 81/96 (84%), Gaps = 3/96 (3%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 1851 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 1792 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||| ||||| | || ||||| Sbjct 1791 CGTGGGTTCGAACCCCACTTCTGAC-ATTTTTTATT 1757 >seq1984824 Length=5553 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 2606 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 2665 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 2666 GTGGGTTCGAACCCCACTTCTGACA 2690 >seq150389 Length=2822 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 2448 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 2507 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 2508 GTGGGTTCGAACCCCACTTCTGACA 2532 >seq120958 Length=3583 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/90 (84%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 2309 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 2368 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||| |||||||| |||||| |||| Sbjct 2369 GTGGGTTCAAACCCCACTTCTGACAGATTA 2398 >seq840999 Length=2108 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 889 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 948 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| |||||||| ||||||| Sbjct 949 GTGGGTTCAAACCCCACTTCTGACAA 974 >seq849692 Length=5681 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 4362 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 4303 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| |||||||| |||||| Sbjct 4302 GTGGGTTCAAACCCCACTTCTGACA 4278 >seq872117 Length=9679 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 2355 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 2296 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| |||||||| |||||| || Sbjct 2295 TGGGTTCAAACCCCACTTCTGACATAT 2269 >seq846929 Length=6137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3589 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3646 Query 126325 GGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||| ||||||||| ||| ||| ||| ||||| Sbjct 3647 GGGTTCAAACCCCACAGCTGTCAATATTTTTATT 3680 >seq321966 Length=1871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 1245 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 1186 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 1185 TGGGTTCAAACCCCACTTCTGACA 1162 >seq195841 Length=710 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG 126321 || || ||| |||||||||||||||||||||||||||||| | |||||| || | | Sbjct 183 TAAAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGG 240 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||| ||||||||| ||| |||| Sbjct 241 CGTGGGTTCAAACCCCACAGCTGTCAAA 268 >seq886600 Length=2420 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 605 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 662 Query 126325 GGGTTCGAACCCCACACCTGACA 126347 |||||| ||||||||| ||| || Sbjct 663 GGGTTCAAACCCCACAGCTGTCA 685 >seq846723 Length=5673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3933 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3876 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| ||| || || || Sbjct 3875 GGGTTCAAATCCCACAGCTGTCAATTTTTTCTT 3843 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 354 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 297 Query 126325 GGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 |||||| || |||||| ||| || | || ||||| Sbjct 296 GGGTTCAAATCCCACAGCTGTCATACTTTTTATT 263 >seq1988974 Length=2011 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 813 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 756 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 755 TTCAAATCCCACAGCTGTCACATTTTT 729 >seq843023 Length=8028 Score = 82.4 bits (90), Expect = 8e-11 Identities = 76/94 (81%), Gaps = 3/94 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 7624 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 7681 Query 126325 GGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||| || |||||| ||| ||| ||| || || Sbjct 7682 GGGTTCAAATCCCACAGCTGTCAACATTTTTCTT 7715 >seq60664 Length=9228 Score = 82.4 bits (90), Expect = 8e-11 Identities = 74/92 (80%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 8904 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 8961 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTAT 126356 |||||| || |||||| ||| || || |||| Sbjct 8962 GGGTTCAAATCCCACAGCTGTCATTTTTTTAT 8993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542397029835240