Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq60244 378 1e-99 >seq60244 Length=9325 Score = 378 bits (418), Expect = 1e-99 Identities = 601/847 (71%), Gaps = 29/847 (3%) Strand=Plus/Minus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | |||| |||||||||||||||| | ||||| || ||| || Sbjct 1288 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 1229 Query 42372 GCCGGCTGGGAGTC-ACTGTCTGAGAACGAAAAGTTT---TTCCTCAAAAACATACTGGC 42427 | |||||| | ||| ||| ||||| || ||| || | | || || Sbjct 1228 CGCCACTGGGACACGACTCTCTCC-AACGACGAGCGCCACTTCATCTCCCATGTGCTCGC 1170 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 1169 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCTGA 1110 Query 42488 GGTGCAGTACTTTGAGGC--GCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTG 42545 |||||| | ||||| | ||| ||||||||||||||||| ||||| |||||| | Sbjct 1109 CGTGCAGGTCGCCGAGGCCAGGGCT--TTCTACGGCTTCCAGATCGCCATCGAGAACATC 1052 Query 42546 CACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGT 42602 ||||| ||| ||||| | ||||||| | || ||||||| || ||||||| Sbjct 1051 CACTCCGAGATGTACTCG---CTGCTCATAGAGACCTACATCCGCGACGACGTCGAGAAG 995 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || || ||| | | ||||| |||||||| Sbjct 994 GACCGCCTCTTCCGCGCCATCGACACCATCCCCGCCGTTCGCCGCAAGGCCGACTGGGCC 935 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 ||| ||||||||| | || ||| |||| |||| | | || ||||| || Sbjct 934 CTCCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTG 879 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGT 42781 ||||||||||||||||||||||||| ||||| | ||||||||||||| ||| || || Sbjct 878 CGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTGAAGAAGCGGGG 819 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 | ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | Sbjct 818 GCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTG 759 Query 42842 GGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGG 42899 ||||| ||||||||||| | ||| | ||| | |||| || || || || Sbjct 758 CGACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTGGACGAGTCCCGC 704 Query 42900 GTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTG 42959 ||| | ||| || | ||||||||||| || |||| ||||||| || | |||| Sbjct 703 GTCTTCGAGATCGTCTCCGAGGCCGTGGACATTGAGAGGGAGTTCGTCTGCGACGCGCTC 644 Query 42960 CCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCC 43019 ||| | || |||||||||||| |||||||||| || |||||||| ||| ||| || Sbjct 643 CCCTGCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCA 584 Query 43020 GACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 |||| || || || | | |||| || | || |||||| | | ||| ||||| Sbjct 583 GACCGCCTGCTCATGGC-GCTGGGCTGCAACAAGCTGTACAACGCCACCAACCCGTTCGA 525 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 || |||||| ||||||| || |||||||||| ||||| |||||||||||||||| ||| Sbjct 524 CTGGATGGAGCTCATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGA 465 Query 43139 CTACCAG 43145 |||||| Sbjct 464 GTACCAG 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919811157899760