Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq50314 149 2e-31 seq2072468 111 5e-20 seq54357 91.5 4e-14 >seq50314 Length=262 Score = 149 bits (164), Expect = 2e-31 Identities = 190/259 (73%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 5754 TATCCGGAACTCGCCAACGGCATGCTGAAGGGCTACCCGGTAGGCAAAACCACGCAAGTG 5813 ||||||||| ||| | ||| || | ||||||||||| || ||| | || || | Sbjct 258 TATCCGGAAATCGAGCAAGGCCTGTTCAAGGGCTACCCAGTTGGCTTGAGCAACCAGATC 199 Query 5814 CCGATCAATCTCGGTGAAGCCGGCAAAGAGTCGGAGATCTATTTCACCGACTTCGGCGAC 5873 ||| |||| || || | | ||| | ||| | || | || ||| | |||||| ||| Sbjct 198 CCGGTCAACCTGGGCGCCGGTGGCGATGAGACCGAATTTTACTTCGTCAACTTCGCAGAC 139 Query 5874 GTCTTCATCGGCGAGGA-AGAAACGCTGGAGATCGACTACAGCAAGGAAGCCACCTACAA 5932 | | |||||||| || | || ||| |||| || ||| || |||||| ||||||| Sbjct 138 ATGATGATCGGCGAAGACATGGAC-CTGACGATCTCCTTCAGTAACGAAGCCTCCTACAA 80 Query 5933 GGACGCCGATGGTCACATGGTCAGTGCGTTTCAGCGCGACCAGACGCTGATCCGGGTGAT 5992 ||||||||| || |||||||||||||||| ||||| |||||||||||| || ||||| Sbjct 79 GGACGCCGAAGGCAACATGGTCAGTGCGTTCCAGCGTGACCAGACGCTGGTCAAAGTGAT 20 Query 5993 CGCAAAGAACGACTTCGGC 6011 ||| ||| ||||||||||| Sbjct 19 CGCCAAGCACGACTTCGGC 1 >seq2072468 Length=291 Score = 111 bits (122), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 17603 CGACGGCGGGTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCT 17662 ||| || || | ||| |||||||| || | || ||||||||||||| || ||| Sbjct 287 CGATGGAGGCGCCTATCAGCAGGTGCCGGTGGACGCAGTCGACGGCAAGACCACCACGCG 228 Query 17663 CTATGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGCGT 17722 ||| |||||||||| ||| ||||| ||||| ||| | | ||| ||| ||| ||||| Sbjct 227 CTACGAGCGCTCGCTTCGCATCGATTTGCCGGACGCCACCACTGGCTGGCAGATACGCGT 168 Query 17723 GCGCCGCATCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACATCGAGG- 17781 ||||||| | ||||||||| | |||| | |||||||||| | || | | || Sbjct 167 GCGCCGCCTGACGCCGAACCAGAACACCAACAAGATCGCCGAC---ACCATGCTGGTGGC 111 Query 17782 CGATT--ACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCT 17830 || || || ||| ||||||| ||||| |||||||||| || ||||| Sbjct 110 CGGTTGCACAGAGGTCATCGACGCCAAGCTGCGCTATCCGAATACTGCGCT 60 >seq54357 Length=392 Score = 91.5 bits (100), Expect = 4e-14 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 3964 CACATGAACCCGTGCGAGCCGATGACGAGCTACGAGGGGCTGCGTGCCGCGGTGAATCAG 4023 ||||| | | |||||| | ||||| ||||| ||| ||||| || | || | Sbjct 209 CACATCAGCATGTGCGAAACCATGACCAGCTATGAGTCACTGCGGGCGCAGTTGCGCAAC 150 Query 4024 GCAGTGGCCGACCCCGCGGTCGAACACATCGTGCTCGATATCGACAGCAATGGCGGCAGC 4083 || || ||||| || ||| |||| ||||||||| || ||||||||| ||| || Sbjct 149 GCGGTAGCCGATCCGATGGTTGAACGCATCGTGCTGGACATCGACAGCCCTGGTGGGTCT 90 Query 4084 GCCACCGGCGCGTTCGAACTGGCCGACGATATCCGGGCCGCGTCGCTGGTCAAGCCAATT 4143 || |||||| ||||||||||||| |||||| || ||| | | | | ||||| || Sbjct 89 GCTGTCGGCGCTTTCGAACTGGCCGCCGATATTCGCGCCATGGCTCAGCAGAAGCCCATC 30 Query 4144 ACCGCGATCGTGAACTTC 4161 |||| ||||| |||||| Sbjct 29 ACCGGCATCGTTAACTTC 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151794889864632