Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq50522 138 3e-28 seq50588 136 1e-27 seq49796 96.9 8e-16 >seq50522 Length=209 Score = 138 bits (152), Expect = 3e-28 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 3073 GCCGAATCCGCCGGTGTTGTTCGGAATGATGCCCATGAGCTGCGGCGGTACGCGGTGCGC 3132 |||||| || |||| || | ||| | |||||||| |||||||| |||| ||| |||| Sbjct 194 GCCGAAGCCACCGGCATTCTGCGGCACGATGCCCAGCAGCTGCGGGGGTATGCGCAGCGC 135 Query 3133 GGCGAGCTGGTCGTCGCGCGTGACGTTCTTGATGTTCCAGAACTCGTCCTTCGCGGCCAC 3192 ||| || ||| || || || || ||||||| |||||| ||||| || ||||| Sbjct 134 GGCCAGAATGTCATCACGAGTCACACGCTTGATGCCGGTGAACTCATCCTTGGCCGCCAC 75 Query 3193 CTCGGACACCGGTAGCAACTGGATCCCATCCTTCTTGCCATTGGGCGCGTACATGAACAG 3252 ||| | ||| | || ||| | |||||||||||||||||||||| | ||||||||| Sbjct 74 TTCGCTGATCGGGATCAGCTGCAATCCATCCTTCTTGCCATTGGGCGAATGCATGAACAG 15 Query 3253 GTTGCGGAAATTGC 3266 |||||||||||||| Sbjct 14 GTTGCGGAAATTGC 1 >seq50588 Length=314 Score = 136 bits (150), Expect = 1e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 3244 CATGAACAGGTTGCGGAAATTGCCCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGT 3303 |||||||||||||||||||||||||||||| | | || ||| || |||| | Sbjct 313 CATGAACAGGTTGCGGAAATTGCCCGGCCCACGCGAGTCCCGCAGCGCTTCACGCAAGGC 254 Query 3304 GTCGACGTCCTCCTGCTTCTGCGCCGCATCGGTCATGTACAGGATGAAGCCGGCGTGCGA 3363 ||| |||||| || | || || |||||||||||| ||||| || ||||| ||||| Sbjct 253 GTCCACGTCCATGCCCTCCGGCTGCGGATCGGTCATGTAGAGGATAAACCCGGCATGCGA 194 Query 3364 GCCGTTCTTGTAGTACCGGCGCCGGAACAGCGTGGCCGATTCGTT 3408 |||||| ||||||||| ||| ||||||| ||||||||||||||| Sbjct 193 GCCGTTGGTGTAGTACCTGCGGCGGAACAACGTGGCCGATTCGTT 149 >seq49796 Length=1140 Score = 96.9 bits (106), Expect = 8e-16 Identities = 201/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 26671 TCCACCCGCACCCGGTCGATCACCTCACGCCCATACTTGGCCACGACGTGGAACAAGTCG 26730 || || || |||||||||||||| || || || || || || | ||||||||||| |||| Sbjct 858 TCAACGCGGACCCGGTCGATCACTTCCCGGCCGTATTTCGCGATGACGTGGAACAGGTCG 799 Query 26731 TAGACCACCTCGGCCTGCGGGCAATGCGCGTTGATCTCCAGTTCGTAGGCGGTCGTCATG 26790 ||||||||| || | ||| || ||| | | ||||| ||| | || || ||||| Sbjct 798 TAGACCACCCGCGCATTCGGACATTGCTTTTGCACTTCCAGGTCGAATGCCGTGTTCATG 739 Query 26791 TCGATTGCCACCGCCTCGAT-GCGCTGGGCAACGCCCTCCG-GAAGCTGTTCGAAGAAGG 26848 || || || ||| | ||||| |||| |||| || | || ||| |||||| | Sbjct 738 TCCATCGCTACCACTTCGATAGCGC--GGCAGCGTTCGACGCCCAGCCAGGTGAAGAACG 681 Query 26849 CGCGGGCAGTCTCGCGCGAGCGCCCCGGCCCGATCCAGAGCACCTGCCGGCCGATCGG-A 26907 ||| | || || || || || | |||||| |||||||||| | |||| | Sbjct 680 GACGGATGGCTTCACGGCTACGGCCTTCGCCAACCCAGAGGACCTGCCGGCTG-TCGGCA 622 Query 26908 TCAACGACCACCGTGGCATAGCGATGGCCTTTATGGAGTGCGAACTCGTCCAT 26960 || | || || ||||| ||||||||||| || || || || || ||||| Sbjct 621 TCGAGCACGACTGTGGCGTAGCGATGGCCCTTGAACAGGGCAAATTCATCCAT 569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120852901664164