Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_009447.1 Length=52414 Score E Sequences producing significant alignments: (Bits) Value seq18005 167 8e-37 >seq18005 Length=1826 Score = 167 bits (184), Expect = 8e-37 Identities = 297/429 (69%), Gaps = 7/429 (2%) Strand=Plus/Minus Query 29319 CCCGGCGTATTCACGCCGCGTGACTCCATGCACATGTGGCGAGCA-TTGATCGTGACGTA 29377 |||||||| | |||||| ||||||||||||||||| ||| ||||| ||| Sbjct 496 CCCGGCGTGCGGATGCCGCGGCTTTCCATGCACATGTGGCG-GCACTTGATGACCACGCC 438 Query 29378 AACCGCGCGCGGCTGAACGTGTTGGGCCAGCGCATCCGCGATCTGGTTCGTCAGGCGCTC 29437 || || ||| | | || ||||| || ||||||||| |||||||||||| Sbjct 437 GACGGCCTTCGGTTCCAGCACTTCCATCAGCGTATTGGCGATCTGGACCGTCAGGCGCTC 378 Query 29438 TTGAACTTGCAGGCGCTTGGCGAAAATGTCTGCCAGCCGCTTGAGCTTCGAAATACCGAC 29497 || || ||||||||||||||||| | ||| |||| || | |||||||| | ||||| Sbjct 377 CTGCACCTGCAGGCGCTTGGCGAACACGTCGACCAGGCGGGTCAGCTTCGACAGGCCGAC 318 Query 29498 GACTTTGCCGCTCGGGATATAGCCGATATGGGCCGTTCCCATGATCGCCGCCATATGGTG 29557 || ||| || | || | |||||||| |||| | || | || || ||||| ||||| Sbjct 317 GATTTTTCCATTTGGCAAATAGCCGACGGTGGCCTTGCCGAAGAACGGCGCCAGGTGGTG 258 Query 29558 TTCGCAGTGCGAATAGATCGGGATATCGCGAACGATAATCCAGTCGTCGGAGCCTTCCGC 29617 |||||| || |||| |||||| |||| || | ||| |||| | | | || || Sbjct 257 TTCGCAATGGCTGTAGACCGGGATGCCGCGCACCACGATCAGCTCGTTGTATTCCTCGGC 198 Query 29618 GCCATCCTCGAACACCTTGAGCACTTCGGCCGGGTCGTGCATATAGCCCGCCGCCCA-TG 29676 |||||| ||||| ||||||| | ||| ||||||| ||| ||||| | | ||| || Sbjct 197 GCCATCTTCGAAGGCCTTGAGGATCTCGACCGGGTCCTGCTCGTAGCCGGAAGTCCAGTG 138 Query 29677 ACGACAACCACGCCTTGACGACTCGCTTCGGCGTTTCGCGCAAGCCTTCGCGGTCGATGT 29736 | ||| |||||| |||| ||| ||| || ||| ||| ||| || | | | Sbjct 137 ----CTTCCAGGCCTTGGCGACGCGCGCCGGGGTCTCGTGCAGGCCGGGACGATTGGGAT 82 Query 29737 CTTCGCCGA 29745 ||||||||| Sbjct 81 CTTCGCCGA 73 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163467578574512