Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq362679 102 6e-17 seq1989185 100 2e-16 seq980325 96.9 3e-15 seq948143 96.9 3e-15 seq878454 95.1 9e-15 seq117303 89.7 4e-13 seq1978033 86.0 5e-12 seq622719 86.0 5e-12 seq123434 86.0 5e-12 seq95597 86.0 5e-12 seq694938 84.2 2e-11 seq138594 84.2 2e-11 seq839779 82.4 6e-11 seq839203 82.4 6e-11 seq237526 82.4 6e-11 seq102963 82.4 6e-11 >seq362679 Length=1828 Score = 102 bits (112), Expect = 6e-17 Identities = 157/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| |||||||| || || ||| ||||||||| |||||||| || ||||| || Sbjct 1513 AGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGG 1454 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||||||| || || || || |||||||| ||| || | || ||| Sbjct 1453 CCATCCTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCC 1394 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| || || ||||| | | | |||| ||| || |||| || Sbjct 1393 TTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAAGACTCAACCTCGAGGGTG 1334 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133 || || || ||||| ||||| ||||||||||| ||||| | ||| Sbjct 1333 ATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCATCTGTAA 1290 >seq1989185 Length=2918 Score = 100 bits (110), Expect = 2e-16 Identities = 106/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || ||||| || |||||||| ||| ||||||||| ||||||||||| | Sbjct 2754 ACCTCCTCGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG- 2812 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| || || | || |||| |||||||| ||||| || ||||||||||| ||| | Sbjct 2813 CAAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGG 2872 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 2873 GGATGCCCTCCTTGTCC 2889 >seq980325 Length=977 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| ||||| ||| ||||||||| |||||||| || || || || || Sbjct 760 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC-AAGGGTGCG 818 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| ||||||||||| || |||||||||||||||||| || | || ||| Sbjct 819 ACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTC 878 Query 34029 TTTGTCC 34035 |||||| Sbjct 879 CTTGTCC 885 >seq948143 Length=1505 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || |||||||| ||||| ||| |||||||||||||||||| || || || || || Sbjct 323 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC-AAGGGTGCG 265 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| ||||||||||| || |||||||||||||| ||| || | || ||| Sbjct 264 GCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTC 205 Query 34029 TTTGTCC 34035 |||||| Sbjct 204 CTTGTCC 198 >seq878454 Length=5435 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct 1060 CCACCACGCAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 1001 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||||||||| || || |||||||| ||| || Sbjct 1000 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 941 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 940 ATGCCCTCCTTGTCC 926 >seq117303 Length=1752 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| ||||| || ||||||||| |||||||| |||||| Sbjct 211 CCACCACGCAGGCGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 152 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | ||||||||||| || || ||||||||||| ||| || Sbjct 151 AGAGTGCGGC-CATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGG 93 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 92 GATGCCCTCCTTGTCC 77 >seq1978033 Length=13150 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||||| || || || |||||||||||||||||||||||| Sbjct 5509 CCTCCACGAAGGCGGAGCACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCA 5450 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | ||||| || ||||| |||||||||||||| ||| || Sbjct 5449 AGAGTG-CGACCATCCTCAAGCTGCTTACCTGCAAAGATCAGGCGCTGCTGGTCCGGGGG 5391 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 5390 GATGCCCTCCTTGTCC 5375 >seq622719 Length=209 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 1 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 60 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||||||||| |||||||||||||||||| || Sbjct 61 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 120 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 121 ATGCCCTCCTTGTCC 135 >seq123434 Length=6912 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| ||| ||||| ||| ||||||||||||||||| || Sbjct 4084 CCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 4143 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| |||| | || ||||| ||||| || ||||| || || | ||||| || || Sbjct 4144 AATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGA 4203 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 4204 ATGCCCTCCTTGTCC 4218 >seq95597 Length=7948 Score = 86.0 bits (94), Expect = 5e-12 Identities = 90/116 (78%), Gaps = 2/116 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || |||| || |||| ||||| || |||||||||||||||||| || | Sbjct 2541 ACCACCCCTGAGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAG- 2483 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| ||| || | || ||||| |||||||| |||||||||| |||||||| ||| Sbjct 2482 CAAGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGCTGGTCC 2427 >seq694938 Length=221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || || || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 39 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 98 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| |||| || | ||||| || ||||| || ||||||||||| ||| || Sbjct 99 GAGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGG 158 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 159 GATGCCCTCCTTGTCC 174 >seq138594 Length=2879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || || | || Sbjct 34 AGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 93 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 94 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 153 Query 34030 TTGTCC 34035 |||||| Sbjct 154 TTGTCC 159 >seq839779 Length=3920 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||| ||||| |||||||| || |||| ||| Sbjct 2547 AGACGGAGCACCAGGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 2488 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| |||| ||||| ||||| || ||||| |||||||||||| Sbjct 2487 CCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCC 2443 >seq839203 Length=7618 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || ||||||| || || || ||||||||||||||||||||| | ||| || || Sbjct 692 AGGCGGAGCACCAAGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCCG-CAAGAGTACG 750 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | ||||| | ||||| ||||| || |||||||||||||| ||| || | || ||| Sbjct 751 GCCATCGTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTC 810 Query 34029 TTTGTCC 34035 |||||| Sbjct 811 CTTGTCC 817 >seq237526 Length=3967 Score = 82.4 bits (90), Expect = 6e-11 Identities = 85/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| || |||||| ||||||||| | |||||| || |||| ||| Sbjct 1378 AGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCCAGCGTGCGC 1319 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||||||| ||||| ||||| || |||| ||||||| | ||||||| Sbjct 1318 CCCTCGTCCAGCTGCTTCCCGGCGAAGATCA---GCTGCTGCTGCACCGGC 1271 >seq102963 Length=6263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 3514 CCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3455 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||| ||||| || || ||||||||||| ||| ||| Sbjct 3454 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 3395 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3394 ATGCCCTCCTTGTCC 3380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 387007025636602