Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq362679 102 6e-17
seq1989185 100 2e-16
seq980325 96.9 3e-15
seq948143 96.9 3e-15
seq878454 95.1 9e-15
seq117303 89.7 4e-13
seq1978033 86.0 5e-12
seq622719 86.0 5e-12
seq123434 86.0 5e-12
seq95597 86.0 5e-12
seq694938 84.2 2e-11
seq138594 84.2 2e-11
seq839779 82.4 6e-11
seq839203 82.4 6e-11
seq237526 82.4 6e-11
seq102963 82.4 6e-11
>seq362679
Length=1828
Score = 102 bits (112), Expect = 6e-17
Identities = 157/224 (70%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|||| |||||||| || || ||| ||||||||| |||||||| || ||||| ||
Sbjct 1513 AGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGG 1454
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || |||| ||||||||| || || || || |||||||| ||| || | || |||
Sbjct 1453 CCATCCTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCC 1394
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089
|||||| || || ||||| | | | |||| ||| || |||| ||
Sbjct 1393 TTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCAGAAGACTCAACCTCGAGGGTG 1334
Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133
|| || || ||||| ||||| ||||||||||| ||||| | |||
Sbjct 1333 ATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCATCTGTAA 1290
>seq1989185
Length=2918
Score = 100 bits (110), Expect = 2e-16
Identities = 106/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||||| || ||||| || |||||||| ||| ||||||||| ||||||||||| |
Sbjct 2754 ACCTCCTCGGAGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG- 2812
Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
||| || || | || |||| |||||||| ||||| || ||||||||||| ||| |
Sbjct 2813 CAAGAGTACGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGG 2872
Query 34019 GCACGCTCTCTTTGTCC 34035
| | || ||| ||||||
Sbjct 2873 GGATGCCCTCCTTGTCC 2889
>seq980325
Length=977
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968
|| || |||||||| ||||| ||| ||||||||| |||||||| || || || || ||
Sbjct 760 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC-AAGGGTGCG 818
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
| || |||| ||||||||||| || |||||||||||||||||| || | || |||
Sbjct 819 ACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGGGAATGCCCTC 878
Query 34029 TTTGTCC 34035
||||||
Sbjct 879 CTTGTCC 885
>seq948143
Length=1505
Score = 96.9 bits (106), Expect = 3e-15
Identities = 99/127 (78%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968
|| || |||||||| ||||| ||| |||||||||||||||||| || || || || ||
Sbjct 323 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC-AAGGGTGCG 265
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
| || |||| ||||||||||| || |||||||||||||| ||| || | || |||
Sbjct 264 GCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTC 205
Query 34029 TTTGTCC 34035
||||||
Sbjct 204 CTTGTCC 198
>seq878454
Length=5435
Score = 95.1 bits (104), Expect = 9e-15
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| ||||| ||| ||||||||| |||||||||||||||
Sbjct 1060 CCACCACGCAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCTGCC 1001
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || | || || | |||||||||||||| || || |||||||| ||| ||
Sbjct 1000 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATAAGTCGCTGCTGGTCCGGGGGG 941
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 940 ATGCCCTCCTTGTCC 926
>seq117303
Length=1752
Score = 89.7 bits (98), Expect = 4e-13
Identities = 103/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || |||||||| ||||| || ||||||||| |||||||| ||||||
Sbjct 211 CCACCACGCAGGCGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 152
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || || | || || | ||||||||||| || || ||||||||||| ||| ||
Sbjct 151 AGAGTGCGGC-CATCCTCGAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGAGG 93
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 92 GATGCCCTCCTTGTCC 77
>seq1978033
Length=13150
Score = 86.0 bits (94), Expect = 5e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| | || || ||||||| || || || ||||||||||||||||||||||||
Sbjct 5509 CCTCCACGAAGGCGGAGCACCAAGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCTGCA 5450
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || || | || || | ||||| || ||||| |||||||||||||| ||| ||
Sbjct 5449 AGAGTG-CGACCATCCTCAAGCTGCTTACCTGCAAAGATCAGGCGCTGCTGGTCCGGGGG 5391
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 5390 GATGCCCTCCTTGTCC 5375
>seq622719
Length=209
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || | ||| || || || || || || ||| ||||||||| |||||||| || ||
Sbjct 1 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCG 60
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || | || |||| |||||||||||||| |||||||||||||||||| ||
Sbjct 61 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGATCCGGAGGA 120
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 121 ATGCCCTCCTTGTCC 135
>seq123434
Length=6912
Score = 86.0 bits (94), Expect = 5e-12
Identities = 100/135 (74%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || || |||| ||| |||| ||| ||||| ||| ||||||||||||||||| ||
Sbjct 4084 CCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCTTTCTGAATGTTGTAATCAGCT 4143
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
||| |||| | || ||||| ||||| || ||||| || || | ||||| || ||
Sbjct 4144 AATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCTGGGGGA 4203
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 4204 ATGCCCTCCTTGTCC 4218
>seq95597
Length=7948
Score = 86.0 bits (94), Expect = 5e-12
Identities = 90/116 (78%), Gaps = 2/116 (2%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || || |||| || |||| ||||| || |||||||||||||||||| || |
Sbjct 2541 ACCACCCCTGAGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAG- 2483
Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
||| ||| || | || ||||| |||||||| |||||||||| |||||||| |||
Sbjct 2482 CAAGTGTGCGTCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGCTGGTCC 2427
>seq694938
Length=221
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || || || || |||||||| || || ||| ||||||||| |||||||| || ||
Sbjct 39 ACCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 98
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| ||| |||| || | ||||| || ||||| || ||||||||||| ||| ||
Sbjct 99 GAGGGTTCGGCCGTCCTCAAGCTGCTTCCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGG 158
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 159 GATGCCCTCCTTGTCC 174
>seq138594
Length=2879
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || |||||||| || || ||| ||||||||| |||||||| || || | ||
Sbjct 34 AGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 93
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
|||| || | ||||||||||| || || ||||||||||| ||| ||| | || |||
Sbjct 94 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 153
Query 34030 TTGTCC 34035
||||||
Sbjct 154 TTGTCC 159
>seq839779
Length=3920
Score = 82.4 bits (90), Expect = 6e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| || |||||||| || ||||| ||| ||||| |||||||| || |||| |||
Sbjct 2547 AGACGGAGCACCAGGTGCAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCCAGGGTGCGC 2488
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014
|||| |||| ||||| ||||| || ||||| ||||||||||||
Sbjct 2487 CCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGATCC 2443
>seq839203
Length=7618
Score = 82.4 bits (90), Expect = 6e-11
Identities = 96/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968
|| || ||||||| || || || ||||||||||||||||||||| | ||| || ||
Sbjct 692 AGGCGGAGCACCAAGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCCG-CAAGAGTACG 750
Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028
| ||||| | ||||| ||||| || |||||||||||||| ||| || | || |||
Sbjct 751 GCCATCGTCGAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTC 810
Query 34029 TTTGTCC 34035
||||||
Sbjct 811 CTTGTCC 817
>seq237526
Length=3967
Score = 82.4 bits (90), Expect = 6e-11
Identities = 85/111 (77%), Gaps = 3/111 (3%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|| ||||||||||| || |||||| ||||||||| | |||||| || |||| |||
Sbjct 1378 AGGCGCAGCACCAGGTGGAGCGTGGACTCCTTCTGCACGTTGTAGTCGGCCAGCGTGCGC 1319
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||||||| ||||| ||||| || |||| ||||||| | |||||||
Sbjct 1318 CCCTCGTCCAGCTGCTTCCCGGCGAAGATCA---GCTGCTGCTGCACCGGC 1271
>seq102963
Length=6263
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| | || || |||||||| || || ||| ||||||||| |||||||| || ||
Sbjct 3514 CCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3455
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| || |||| || | ||||| ||||| || || ||||||||||| ||| |||
Sbjct 3454 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 3395
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 3394 ATGCCCTCCTTGTCC 3380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 387007025636602
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