Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq60244 159 7e-34 seq18956 84.2 5e-11 >seq60244 Length=9325 Score = 159 bits (176), Expect = 7e-34 Identities = 357/533 (67%), Gaps = 6/533 (1%) Strand=Plus/Minus Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267 || ||| ||||||||| | ||| || || |||| |||||| | ||||| | Sbjct 988 CTCTTCCGCGCCATCGACACCATCCCCGCCGTTCGCCGCAAGGCCGACTGGGCCCTCCGC 929 Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327 ||| | || ||| | || || ||||| ||||||||| | ||||| || || Sbjct 928 TGGATCGACGGCGGGGAGCGCTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGC 869 Query 243328 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCT 243387 || | || || || |||||||||||||| |||||| ||| || | ||||| Sbjct 868 ATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCG 809 Query 243388 GGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGT 243447 |||||| | || |||||| ||||| |||||||||||||| ||| | |||| Sbjct 808 GGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCC 749 Query 243448 GAGCTTATGTATTCAAAGCTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATC 243504 || | || | || | |||||| || | || || ||| | ||| Sbjct 748 TGCCTCCTCTACGACATCCTGCGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATC 692 Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 || | || || || || | || | ||| ||| | |||||||| | || ||| ||| Sbjct 691 GTCTCCGAGGCCGTGGACATTGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTC 632 Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 | ||||||||| || |||||| | ||||||||||| ||||| || |||||| | || Sbjct 631 GTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTGGCAGACCGCCTGCTC 572 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 || ||||| || | | || |||||||| ||| ||||| || | || ||||||||| Sbjct 571 ATGGCGCTGGGCTGCAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTC 512 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||| || || || || ||||||||||| ||||| ||| | || || || Sbjct 511 ATCTCGCTGCAGGGCAAGACAAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 459 >seq18956 Length=928 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 306805 GAATCATCTCCTACGATGATACGGGATGGATAGAGATTATCATACAAGGCTCTACCTTCA 306864 |||| || || |||||||| ||||| |||| || || || |||| ||| | |||||| Sbjct 800 GAATGGTCGCCGACGATGATCCGGGACGGATGCAGGTTGTCGTACAGGGCGCGGCCTTCA 741 Query 306865 CGCAGAAATTCTGGGGAGAAAATGATATTTTTGTAGTCGAATTGTTCACGCATC 306918 ||||| ||||| || ||||| ||||| || | | |||| |||||||||||| Sbjct 740 CGCAGGAATTCCGGCGAGAAGATGATGTTCTGGACACCGAACTGTTCACGCATC 687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073517908234350