Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq60244 176 5e-39 seq9471 109 6e-19 >seq60244 Length=9325 Score = 176 bits (194), Expect = 5e-39 Identities = 318/454 (70%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||||||||| || | || ||| |||||| Sbjct 461 GTACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCAT 520 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | | ||| | | |||||| || |||| | |||| || Sbjct 521 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGG 578 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | ||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 579 CGGTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 638 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||||||| ||| |||| || ||||||| |||||||| || ||||| || Sbjct 639 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCTCG 698 Query 125996 TGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051 | | | | | |||| | | ||||| | ||| | || ||| || ||| || Sbjct 699 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 754 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 755 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 814 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| ||||||||||||| |||||| || || || || || |||||||||||||| ||||| Sbjct 815 GAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 874 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| || ||| Sbjct 875 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 908 >seq9471 Length=4830 Score = 109 bits (120), Expect = 6e-19 Identities = 256/381 (67%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || ||||| || || ||||| ||||| || ||| |||||| | ||| Sbjct 4041 ACGGTGACCTGCCGATCGAACCGCCCTGGCCGGAGAAGCGCGGAGTCAAGCACATCCGGC 4100 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCAAAGCCATCCATCTCAG 10892 | ||| ||||| |||| || | || || || || | ||||| |||||||| | Sbjct 4101 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCG 4158 Query 10893 TCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACT 10950 | | || || || ||||| || || | ||||| ||| | || ||| ||||||| Sbjct 4159 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCCGCACC 4216 Query 10951 GCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACG 11010 || ||| | |||||||||||||| || |||||||| ||||| || || || | Sbjct 4217 ACGCTGCCTCCCGACGGCGTCAATCTCGTCGATGAAGACGATGCAGGGCGCCTTGGCCTT 4276 Query 11011 GGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 ||| || |||| || | || || |||||| || || || || | || || || Sbjct 4277 GGCCTTCTCGAAGAGGTCCCTCACCCTGGAGGCACCCACGCCGACGAAGAGCTCGACGAA 4336 Query 11071 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 11130 | | |||| || || |||||| || || || || |||| ||| |||||||| Sbjct 4337 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCGAG 4396 Query 11131 GAGGGTCTTCCCCGTCCCAGG 11151 || |||||||| ||||| || Sbjct 4397 CAGCGTCTTCCCGGTCCCGGG 4417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581838079465080