Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq29832 96.9 8e-16 >seq29832 Length=340 Score = 96.9 bits (106), Expect = 8e-16 Identities = 234/343 (68%), Gaps = 21/343 (6%) Strand=Plus/Minus Query 21527 GATGTTCGCGTGGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGC 21586 ||||| | ||||| |||| ||||| |||||||| || ||||||||||| || || Sbjct 340 GATGTACCGGTGGGCACAGCTGCAGCACGTTGACACGCTGACCGATATCCAGCGCGCGGC 281 Query 21587 GCGGTTCTACTACCTGCAGCAGCAGGGGTTTGGCGGGAAGGTCAAC--TCGAAC-TTTGG 21643 |||||||| | ||||||| ||| | |||||||||||||| || | ||| | || Sbjct 280 CCGGTTCTATTTCCTGCAGAAGCTCAGCTTTGGCGGGAAGGTGGACGGCCAAACGCTCGG 221 Query 21644 CAT---CTCGACCACGTCTGGCCCTGGGC-TTAACCTGCTGCGGATCGAGGAGAACCTCA 21699 | | ||| || || || | || | |||||||| ||| | || || | || | Sbjct 220 GGTGGGCCCGA-CAGGT---GCGAAGCGCATCAACCTGCTCCGGTTGGAACAGGATCTGA 165 Query 21700 GCCAGGCGCACTTGCGGCTCTCGCGCGTGTTCGTTGAGAACATGGACTGGAAAGCGGTCA 21759 || | || ||| ||||||| ||||| | | ||| | || |||| |||| | | Sbjct 164 GCGATGCCCACATGCGGCTGCATGGCGTGGTGATCGAGCAGTTGCCCTGG-CAGCGCTGA 106 Query 21760 --TGAAGCGCTACGACCGGCCGCACACGTTGCACTATCTCGACCCGCCGTATTGGGCGAC 21817 |||| | ||||||||||| | ||| || || | ||||||||||||||| ||| Sbjct 105 ATTGAAAAG-TACGACCGGCCCGAGACGCTGTTCTTCTTGGACCCGCCGTATTGGCAGAC 47 Query 21818 CGCTGGCTATGATTGCGAG---TTCCCGTTCGAGGAGTATGAG 21857 | ||||||| || || |||||| |||| ||||| ||| Sbjct 46 TACCGGCTATG---GCCAGGCATTCCCGCTCGAAGAGTACGAG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122366605948734