Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq71034 215 7e-51 seq56478 95.1 2e-14 >seq71034 Length=3563 Score = 215 bits (238), Expect = 7e-51 Identities = 507/742 (68%), Gaps = 49/742 (7%) Strand=Plus/Plus Query 41379 AGCAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGC 41438 |||| || || |||||||| |||| ||||||||||| || | ||| | ||| || | Sbjct 1929 AGCACCTGGGAACGCTGGGAACCGGTAACCACTTCATCGAGATCTGCCTCGACGAGCAGG 1988 Query 41439 AAGACGTGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTC 41498 ||| ||| |||||||||| || |||||||| || ||||| |||||| | Sbjct 1989 GCTTCGTCTGGTTCATGCTGCACTCGGGCTCGCGCGGCGTCGGCAATGCGATCGGCACCC 2048 Query 41499 ACTACATCGAGCGTGCGCAGAAGGAG-TGCGG---CATGTGGCACAGCAGCCTGCCGCAC 41554 ||| |||||||| || || |||| ||||| || | || || ||| ||| || Sbjct 2049 ACTTCATCGAGCAGGCCAAGCAGGACATGCGGACCCACTT----CATCAACCTTCCGGAC 2104 Query 41555 AACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTC----CTGTC 41610 | || || || | | || |||| || | | || | | |||| || | ||| Sbjct 2105 CAGGACCTGGCCTATCTGCCGGAGGGAACGCAGCACTACGACGACTATATCGAAGCGGTC 2164 Query 41611 CATGCTGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGAT 41670 |||| ||| ||| | ||||| || ||| |||| |||||| ||| || | |||| Sbjct 2165 G--GCTG--GGCCCAGAAGTTCGCCCGCATGAACCGTGAAGTGATGATGCGGAACCTGAT 2220 Query 41671 CCAAGCGCTGCGTC--GTCATCT-GCCGGCCTTCGAG-CTGACGGAAGAGGCGGTGAACT 41726 | ||| |||| || ||| | |||||||| | ||| || |||||||||| Sbjct 2221 CGCGGCGGTGCGCACGGTGATCGCGAAACCCTTCGAGACCCACGTG-GAAGCGGTGAACT 2279 Query 41727 GCCACCACAACTATTGTG-AGCAGGAGAACCACTTCGGGCGCAACG-TGTG--GGTCACG 41782 ||||||||||||| ||| || ||||| ||||||||| |||| | |||| ||| ||| Sbjct 2280 GCCACCACAACTA-CGTGCAGAAGGAGCACCACTTCG---GCAAGGATGTGCTGGTGACG 2335 Query 41783 CGCAAGGGTGCGGT-TCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGG 41841 |||||||| ||||| ||| || || |||| || || || |||||||||||||| ||||| Sbjct 2336 CGCAAGGGCGCGGTATCG-GCGCGCGAAGGGGAGCTCGGCATCATTCCGGGATCGATGGG 2394 Query 41842 TACGAAGTCGTACATCGTCAAGGGCAAGGGCAATCC---GCATTCGTACTGCTCGTGCAG 41898 ||||| || ||||| |||||||||||| | | || || || ||||| Sbjct 2395 GGCGAAGAGTTATATCGTGCGCGGCAAGGGCAATGCCGAGAGTTTCAACAGC---TGCAG 2451 Query 41899 TCACGGGGCAGGACGCCGTATGTCGCGCACCGAGGCCGTCAAGCG-----ATTCACCGTC 41953 ||||| || || ||| ||| |||||||| || |||||| ||| | ||| Sbjct 2452 CCACGGCGCCGGCCGCACCATGAGCCGCACCGAAGC---CAAGCGCCGCTATT--CGGTC 2506 Query 41954 GAAGACCTCGTGCAGCAGACGCAGGGTGTTGAATGCC-CGAAGACCAAGGAAGTGCTGGA 42012 || |||| || || ||| | || || || |||| | | ||| |||| ||| | || Sbjct 2507 GACGACCAGGTCAAGGCGACCGAAGGCGTCGAGTGCCGCAAGGACGAAGG-CGTGATCGA 2565 Query 42013 TGAAATCCCGGCCGCGTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGT 42072 || |||||| || |||||||||||||| ||||||| | || ||||| ||||| Sbjct 2566 CGAGATCCCGATGGCCTACAAGGACATCGACGCCGTGATGCAGGCGCAGAGCGACCTGGT 2625 Query 42073 GGAAGTCGTTCATACGCTGAAG 42094 ||||| || || ||||||||| Sbjct 2626 CGAAGTGGTGCACACGCTGAAG 2647 >seq56478 Length=247 Score = 95.1 bits (104), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 41714 GAGGCGGTGAACTGCCACCACAACTATTGTG-AGCAGGAGAACCACTTCGGGCGCAACGT 41772 || || ||||||||||| |||||||| ||| || |||| |||||||||| |||| Sbjct 223 GAAGCAGTGAACTGCCATCACAACTAC-GTGCAGAAGGAACACCACTTCGGCAAGGACGT 165 Query 41773 GTGGGTCACGCGCAAGGGTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGG 41832 | ||| ||||||||||| || || || || || | ||| ||||| ||||||||||| Sbjct 164 GCTGGTGACGCGCAAGGGCGCCGTGTCCGCGCGCGAGGGCGAGCTGGGTATCATTCCGGG 105 Query 41833 ATCCATGGGTACGAAGTCGTACATCGTCAAGGGCAAGGGCAATCCG 41878 || ||||| ||||| | |||||| || || || |||||| Sbjct 104 TTCGATGGGCGCGAAGAGCTTCATCGTGCGTGGTAAAGGGAATCCG 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720670324811400