Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq51151 100 2e-16 >seq51151 Length=971 Score = 100 bits (110), Expect = 2e-16 Identities = 242/358 (68%), Gaps = 10/358 (3%) Strand=Plus/Minus Query 111058 TTCAAGACTAACGTGTACGCGCTGTTCTGGATGTGCCGGGAGGCGCTCAAGGGCATGCGC 111117 |||||||| || ||||||| ||||||||||| | || |||| | | | ||| | Sbjct 860 TTCAAGACCAATCTGTACGCCCTGTTCTGGATCACCAAGGCGGCGGTGCCGCACCTGC-C 802 Query 111118 GCCGGG-GACAGCATAATAACGACCGTTTCGGGCCAGGCCAAAGACCCGTCGACGTTCCT 111176 |||||| | |||||| || || || | |||| |||||| | ||||| ||| | ||| Sbjct 801 GCCGGGCGCCAGCATCATCACCACGGCGTCGGTGCAGGCCTACGACCCCTCGCCCAACCT 742 Query 111177 CGTGGACTACGCGGCGTCCAAGGGCGCCGTGGCGACGTTCACGAAAGGTCTGGCGCGCCA 111236 ||| ||| || | |||||| ||| || | | ||||||||| ||||| || Sbjct 741 GCTGGCCTATTCGCAGACCAAGGCGGCCCAGGTGGCCTTCACGAAATCGCTGGCCAAGCA 682 Query 111237 GGTAGCGTCGCGAGGG-ATAAGAGTCAATGGCGTAGCGCCCGGACCGGTGTGGACACCGC 111295 | | ||| | |||| || | || || | || |||||||||||||||||||| |||| Sbjct 681 GCTGGCGGA-CAAGGGCATCCGCGTGAACGCGGTGGCGCCCGGACCGGTGTGGACGCCGC 623 Query 111296 TGCCCGTG-GCTGGGG---GA--TACGGACGCGTGTCGGACTACGGGGCTGAGGCACCGC 111349 ||| ||| || | || || | || | || | | | ||| | || | ||| Sbjct 622 TGCAGGTGAGCGGCGGCCAGACCCAGGGCAACCTGGAGAAATTCGGCGGCGATTCGCCGA 563 Query 111350 TGAAGAGACCGGCGCAGCCCGTGGAAGTCGCGCCGCTCTTCGTGGAGCTGGCGACCGC 111407 ||||| | ||||| ||||| | ||| | |||||| || || | ||||||| |||| Sbjct 562 TGAAGCGTCCGGCCCAGCCGGCCGAACTGGCGCCGGCCTATGTCGCGCTGGCGGCCGC 505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 372104625864744