Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq30179 98.7 4e-16 >seq30179 Length=518 Score = 98.7 bits (108), Expect = 4e-16 Identities = 184/268 (69%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 124 CGCCATCGCAATAGTGGCGTACACATCAGCCATCGCATCGTGGGCGTTGCTATGTTCAAT 183 ||||| |||||| || ||| |||||| | || ||||||||| || ||| | | Sbjct 247 CGCCAGCGCAATCGTCGCGCGCACATCCGACACCGCATCGTGCGCCGCCTCATGCACCAG 306 Query 184 ACCATTCGCTTTGGTTAAATGCTCAAGGCGAAAGCTCGGTAGACCGTCATCATTTTCAGG 243 || || || |||| | |||||| || |||||||| | ||||| |||| || Sbjct 307 GCCGTTGGCCTTGGACAGATGCTCCAGTTTGAAGCTCGGCCGGCCGTCTTCATGGGTGGG 366 Query 244 CCAGTTTATTCCTTCCGGGCGCAGGGCATAGCAGGCACGCATAACATCCAGTAAATCCCA 303 ||| | || || |||||||||||||| | || |||| || || || | |||||| Sbjct 367 CCATTGAATGCCCTCCGGGCGCAGGGCCCACGTGGTGCGCACCACGTCGAGCAGATCCCA 426 Query 304 GCGCGAGTTATCATGCTGCCAGCTC-CAGGCGTAAGGATCGTAGAAATTACGATAAAAAA 362 ||| | || | |||||| ||| | |||||| || ||| | || || | || | Sbjct 427 CCGCCCGCATTCGTTCTGCCA-CTCGCGGGCGTATGGGTCGATCAGGTTGCGCCAGAACA 485 Query 363 CGTTGCGTGTGACTTCGTCGTCGAAACG 390 || ||||||||||||||||||||| || Sbjct 486 GGTGGCGTGTGACTTCGTCGTCGAAGCG 513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193844658578058