Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq51957 93.3 1e-14 >seq51957 Length=242 Score = 93.3 bits (102), Expect = 1e-14 Identities = 145/201 (72%), Gaps = 11/201 (5%) Strand=Plus/Minus Query 23855 GGAGTTCGCCATCTCTGCGACCAAGAAGAG-GGAGGCGAACTGTACGCGGGTTGGCCGAC 23913 |||| || ||| || ||||||||| || || ||||| |||||||| |||||| |||| Sbjct 241 GGAGCTCACCACATCCGCGACCAAGCGGAAAGGCGGCGAGCTGTACGCAGGTTGGTCGAC 182 Query 23914 CGGGGGTAAGGCTCCCGGCACACCCG-AAGGTGTCCCACGCACAGCCCGCCATAAAGCGA 23972 | ||| | |||||| ||| ||| ||||||||||||| || ||||| |||| Sbjct 181 CAGGGAATGGAAATCCGGCAGGGCCGTAAGCCCTCCCACGCACAGCTCGTCATAACGCGA 122 Query 23973 GGGCACaaaaaaaCGCC-CT---GCGGCGCTGTGCGCCTTACCGATTCGGGCGGCCAAGC 24028 ||| || || ||| || ||||| ||||||||| | | || | |||| |||||| Sbjct 121 ----ACACAATAATGCCGCTTGCGCGGCACTGTGCGCCATTCTAATCCAGGCGACCAAGC 66 Query 24029 CCGACCGCTGAATTTGCAGCG 24049 | || ||||| || |||||| Sbjct 65 CTGATCGCTG-ATGAGCAGCG 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146170776213508