Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq839203 86.0 4e-12 >seq839203 Length=7618 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | ||||| ||||| || || ||||| || |||||||||||| Sbjct 909 TGCCACCACGGAGTCGGAGAACTAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCGG 968 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | || || | ||| |||||||| | ||||| ||||||||||| | Sbjct 969 CTAGGGTGCGACCATCCTCAAGTTGCTTGCCAGCAAAGATCAACCGCTGTTGGTC-CGGG 1027 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| || || ||| ||| | || || || ||| | || | Sbjct 1028 GGATGCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCAA 1087 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || ||||| || || || || || || || ||||| ||||| Sbjct 1088 CCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCAT 1136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348341255445785