Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1978033 100 3e-16 seq839203 98.7 9e-16 seq362679 96.9 3e-15 seq11307 91.5 1e-13 seq878454 86.0 6e-12 seq102963 86.0 6e-12 seq948143 82.4 7e-11 seq139869 82.4 7e-11 seq138594 82.4 7e-11 >seq1978033 Length=13150 Score = 100 bits (110), Expect = 3e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 ||||| || ||||| | | ||| || || || || || || || ||||| || ||||| Sbjct 5284 ATTCCACCACGGAGGCGGAGCACCAGGTGGAGGGTAGACTCTTTCTGGATGTTGTAATCA 5225 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | ||| ||| || | || || || || | |||||||| ||||||||||| Sbjct 5224 GCT-AGGGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGG 5166 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 ||| || || || |||| || || || |||| || | || | ||||| ||||||| Sbjct 5165 CGGGATACCCTCCATATCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCAGAAGACT 5107 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 5106 CAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 5054 >seq839203 Length=7618 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||||| || || || || || || ||||| || |||||| Sbjct 908 ATGCCACCACGGAGTCGGAGAACTAGGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCG 967 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | ||| || || || | ||||| || || |||||||| Sbjct 968 GCTAGGGTGCGACCATCCTCAAGTTGCTTGCCAGCAAAGATCAACCGCTGTTGGTCCGGG 1027 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||| |||| || || || || || || ||||| || | |||||||||||||| Sbjct 1028 GGA-TGCCCTCCTTGTCCTGGATCTTCGCTTTGACATTGTCGATCGTGTCGGAAGACTCA 1086 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || ||||| | || |||||||| || || || || ||||| |||||| Sbjct 1087 ACCTCAAGAGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAAATCTGCATC 1137 >seq362679 Length=1828 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 1525 ATGCCACCCCGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1466 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| ||| || || ||| | || | || ||||||||||| Sbjct 1465 GCCAAGGTGCGGCCATCCTCCAGTTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGA 1406 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || | | || | | | || | || | ||||| |||||||| Sbjct 1405 GGGATGCCCTCCTTGTCCTGGA-TCTTGGCCTTAACGTTGTCGATCGTGTCAGAAGACTC 1347 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| || || || ||||| || |||||| Sbjct 1346 AACCTCGAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCATC 1295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||||| | || || || || || || ||||| ||||| || || || Sbjct 1753 ATGCCACCACGGAGCCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 1694 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | |||| || ||||||||||| Sbjct 1693 GCCAGGGTGCGGCCATCTTCGAGCTGCTTACCGGCGAAGATCAGACGCTGCTGGTCCGGA 1634 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | |||||| || ||||| Sbjct 1633 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTC 1575 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || |||||||| ||||| || ||||| || ||||| Sbjct 1574 AACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTAACAAATATCTGCAT 1524 >seq11307 Length=2396 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | || || || || ||||| ||||| ||||| || || || Sbjct 19 ATGCCTCCGCGAAGACGGAGAACAAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAGTCA 78 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | || || || ||| | || | || |||||||||||| Sbjct 79 GCGAGGGTCCTCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGC 138 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || ||||| || || || |||| || | || | |||||| || ||||| Sbjct 139 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGATGACTC 197 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || || || || ||||| || |||||| Sbjct 198 CACCTCAAGGGTGATGGTCTTGCCCGTCAGTGTCTTCACAAAGATCTGCATC 249 >seq878454 Length=5435 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || ||||| | ||| || || || || || ||||| ||||| ||||| || Sbjct 835 ATGCCTCCACGAAGCCTGAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTATAGTCA 776 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | || | || ||||||||||| Sbjct 775 GCCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGG 716 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || |||||||| ||||| || || ||| || | || | || | |||||| || ||||| Sbjct 715 GGGATGCCTTCCTTATCCTGGATCTTTGCCTTCA-CGTTGTCGATGGTGTCAGAGGACTC 657 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || || || || || || ||||| Sbjct 656 CACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 606 >seq102963 Length=6263 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 3514 CCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3455 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 3454 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 3395 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | |||||| || ||||| || Sbjct 3394 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCAC 3336 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || ||||| || || || || || || || |||||| Sbjct 3335 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 3287 >seq948143 Length=1505 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| || || || || || ||||| || || || || || Sbjct 332 CCACCACGGAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 273 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| || || || ||| | |||| || ||||||||||| || Sbjct 272 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 213 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | ||||||||| ||||| || Sbjct 212 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGACGACTCCAC 154 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| | || ||||| || || || || || || || |||||| Sbjct 153 CTCAAGAGTGATAGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATC 105 >seq139869 Length=4701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| | || || || |||||||| ||||| || ||||| Sbjct 774 ATACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAATCC 715 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | |||| || ||||||||||| Sbjct 714 GCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGG 655 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||| || ||||| Sbjct 654 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGACTCA 595 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || |||||||| || || || || || || ||||| Sbjct 594 ACCTCCAAGGTGATGGTCTTGCCGGTGAGTGTCTTCACGAAGATCTGCAT 545 >seq138594 Length=2879 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 25 CCACCGCGGAGTCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 84 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 85 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 144 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | |||||| || ||||| || Sbjct 145 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCCAC 203 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || ||||| || || || || || || || |||||| Sbjct 204 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440262976233960