Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq18368 203 1e-47 seq138243 188 3e-43 seq18855 82.4 3e-11 >seq18368 Length=1007 Score = 203 bits (224), Expect = 1e-47 Identities = 241/326 (74%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 9111 ATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGC 9170 ||||| || |||||||| |||||| |||| ||||| ||||| || || |||||||| || Sbjct 163 ATGGCTTCAGTCAACAAGGTCATCATCGTGGGCAACCTCGGTGCTGATCCGGAAACACGT 222 Query 9171 TACCTCCCGAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAG 9230 ||| | || || |||||||| || |||| ||||| | || || |||||||||| ||| Sbjct 223 TACATGCCCAGTGGCGACGCGGTCACCAACATCCGCGTGGCAACCACCGATCGCTTTAAG 282 Query 9231 GACAAGGCGAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGGC 9290 ||||||| ||||| ||| | |||| ||||| ||||| ||| |||| |||||||| Sbjct 283 GACAAGGGTAGCGGTGAGATGCGCGAAGCCACCGAATGGCATCGCATCGCGTTCTTCGGT 342 Query 9291 CGCCTCGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGGG 9350 ||| | || || |||| | |||| | || ||||| | ||||||||||||||||| Sbjct 343 CGCTTGGCGGAAATCGCTGGCGAGTATCTGAAGAAGGGATCGTCGGTCTACATCGAGGGT 402 Query 9351 CGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATC 9410 || | || || || | || ||| || ||||||| | | |||| |||||||| Sbjct 403 CGTCTGAAAACCCGTCAATG---GGAGAAAGACGGCCAGAAGCAATACAGCACCGAGATT 459 Query 9411 GTCGCCGACAGGATGCAGATGCTCGG 9436 ||||| || |||||||||||| || Sbjct 460 GTCGCGGAGCAGATGCAGATGCTTGG 485 >seq138243 Length=1642 Score = 188 bits (208), Expect = 3e-43 Identities = 238/327 (73%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 9110 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 9169 ||||||||| |||||||| |||||| |||||||||| |||||| ||| ||||||| ||| Sbjct 441 CATGGCATCAGTCAACAAGGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCG 382 Query 9170 CTACCTCCCGAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAA 9229 |||| | |||||||||||||| ||| |||| ||| | || || | | | ||| Sbjct 381 CTACATGCCGAGCGGCGACGCCATCGCCAACATCGCAGTGGCCACCTCGTACAAATCCAA 322 Query 9230 GGACAAGGCGAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGG 9289 |||| | ||||||| || ||| ||||||| ||||||||| || | |||||||| Sbjct 321 GGACCGCAACACCGGCGAGCAGAAAGAACTGACCGAATGGCACCGCATCTCCTTCTTCGG 262 Query 9290 CCGCCTCGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACATCGAGGG 9349 ||| ||||| || ||||||| | || |||| || || | ||||||||| |||| || Sbjct 261 CCGTCTCGCTGAAATCGTCGGCCAGTACCTGAAGAAAGGTTCCTCGGTCTACGTCGAAGG 202 Query 9350 GCGCATCAAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGAT 9409 ||| | |||| || |||| || | |||| || |||||| | ||||| || Sbjct 201 CCGCCTGCAGACCCGCAAGTACACCGACAAGGACGGCATCGAACGCTACGCCACCGACAT 142 Query 9410 CGTCGCCGACAGGATGCAGATGCTCGG 9436 | |||| || | ||||||||||| || Sbjct 141 CATCGCTGAAAACATGCAGATGCTGGG 115 >seq18855 Length=767 Score = 82.4 bits (90), Expect = 3e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 17021 AGCAGCGGTTCGTCGACGAGTACCTGATCGACTTGAACGCCACGAAGGCGGCCGAGCGGG 17080 |||||| |||||||| || |||||| | ||| ||||||| || ||||| || || | Sbjct 542 AGCAGCTCTTCGTCGATGAATACCTGGTTGACCTGAACGCAACCAAGGCTGCGATCCGTG 601 Query 17081 CCGGCTACAGCGCCAAGACGGCGCA 17105 |||||||||||||||||||||| || Sbjct 602 CCGGCTACAGCGCCAAGACGGCACA 626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195617409162874