Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq835595 105 2e-18 seq2072468 91.5 4e-14 seq833845 87.8 4e-13 >seq835595 Length=206 Score = 105 bits (116), Expect = 2e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 8911 TCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCGATCTG 8970 || ||||| || || | || || ||||| || ||||| || || |||||||| || | Sbjct 73 TCTCAGCTCAACCGTAGTCTGGAAAATCGTCCCAACAAACGTCCTGTCATGTCTGACTTA 132 Query 8971 CGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCGATGAG 9030 || || |||||||||||||| || |||||||| ||||| | |||||||| || |||||| Sbjct 133 CGTGAATCGGGTGCGATCGAACAAGATGCCGATTTGATCATGTTTATCTATCGGGATGAG 192 Query 9031 GTCTATAA 9038 ||||| || Sbjct 193 GTCTACAA 200 >seq2072468 Length=291 Score = 91.5 bits (100), Expect = 4e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29454 CGACGGAGGCTCGTACGCACAGGTGCTGTCGTCGGCCTTCGATGGCAAGACGACGTCGCT 29513 ||| |||||| | || ||||||| | | || |||| |||||||| || ||| Sbjct 287 CGATGGAGGCGCCTATCAGCAGGTGCCGGTGGACGCAGTCGACGGCAAGACCACCACGCG 228 Query 29514 TTACGAGCGCTCGCACCGGATCGAGTTGCCGCGCGCCACAACCGGCTGGTTGGCCCGCGT 29573 ||||||||||||| || ||||| |||||| |||||| || |||||| | ||||| Sbjct 227 CTACGAGCGCTCGCTTCGCATCGATTTGCCGGACGCCACCACTGGCTGGCAGATACGCGT 168 Query 29574 GCGCCGCATCACGCCTAACGCACACAGCTCACTGATTGCGGACACGGTGAATATCGAAGC 29633 ||||||| | ||||| ||| ||| | ||| || ||||| || | | | Sbjct 167 GCGCCGCCTGACGCCGAACCAGAACACCAACAAGATCGCCGACACCATGCTGGTGGCCGG 108 Query 29634 GATCACGGAGGTGATTGACCGCAAGCTGCGGTATCCGATGACAGCGCT 29681 ||| ||||| || ||| ||||||||| ||||||| || ||||| Sbjct 107 TTGCACAGAGGTCATCGACGCCAAGCTGCGCTATCCGAATACTGCGCT 60 >seq833845 Length=260 Score = 87.8 bits (96), Expect = 4e-13 Identities = 126/175 (72%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 35318 ATGGCAAATCCGATTATTCCGTGGATCGGCGGCAAGCGGCGCCT--TGCAGACCATCTCA 35375 ||| | || || || ||| | ||| ||||||||||| ||||| || || || ||| Sbjct 174 ATGCCCAAGCCCATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTACTGAAG--CACCTCT 117 Query 35376 TTCCGCGCTTTCCGGCGCACGACTGCTACGTTGAAGTGTTCGCGGGCGGCGCTGCGTTGT 35435 ||||| ||| || | || ||||||||||| || | ||||| |||||||| |||| | Sbjct 116 ATCCGCACTTCCCAACCCATGACTGCTACGTCGAGGCATTCGCCGGCGGCGCCGCGTCGC 57 Query 35436 ATTTCATGCGGCCG---CCGGCAAAGGTCGAGGTGATCAACGACGTTAACGGCGA 35487 | ||||||||| ||||| || | || || |||||||| | |||||||| Sbjct 56 TGCTGATGCGGCCGTATCCGGCCCAGATGGAAGTCCTCAACGACATCAACGGCGA 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124398402833796