Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq60244 172 7e-38 seq9471 122 1e-22 seq59150 102 1e-16 seq17570 98.7 1e-15 >seq60244 Length=9325 Score = 172 bits (190), Expect = 7e-38 Identities = 317/454 (70%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||||||||| || | || ||| |||||| Sbjct 461 GTACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCAT 520 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || ||||| | | ||| | | |||||| || |||| | |||| || Sbjct 521 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGG 578 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||| ||||||| ||| || |||||| |||| ||| Sbjct 579 CGGTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCG 638 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||||||| ||| |||| || ||||||||||||| || || ||||| || Sbjct 639 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCTCG 698 Query 127469 T-GAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAA 127524 || | | | |||| | | ||| | | ||| | || ||| || || || Sbjct 699 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CAG-GCGAA 754 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 755 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 814 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| ||||||||||||| |||||| || || || || ||||| ||||||||||| ||||| Sbjct 815 GAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 874 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | | |||||||| ||| Sbjct 875 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 908 >seq9471 Length=4830 Score = 122 bits (134), Expect = 1e-22 Identities = 259/381 (68%), Gaps = 8/381 (2%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || || ||||| ||||| || ||| |||||| | ||| Sbjct 4041 ACGGTGACCTGCCGATCGAACCGCCCTGGCCGGAGAAGCGCGGAGTCAAGCACATCCGGC 4100 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCGAAGCCATCCATCTCAG 12807 | ||| ||||| |||| || | || || || || | |||||| |||||||| | Sbjct 4101 CTGTTGGTCGCGGCGAGCACGATGACACCGCTGTTTCCGGA--GAAGCCGTCCATCTCCG 4158 Query 12808 TCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACT 12865 | | || || || ||||| || || | ||||| ||| | || ||| ||||||| Sbjct 4159 TGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCCGCACC 4216 Query 12866 GCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACG 12925 || ||| | |||||||||||||| ||||| ||||| ||||| || || || | Sbjct 4217 ACGCTGCCTCCCGACGGCGTCAATCTCGTCGATGAAGACGATGCAGGGCGCCTTGGCCTT 4276 Query 12926 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||| || |||| || | ||| || |||||| || || || || | ||| || || Sbjct 4277 GGCCTTCTCGAAGAGGTCCCTCACCCTGGAGGCACCCACGCCGACGAAGAGCTCGACGAA 4336 Query 12986 ATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAG 13045 | | |||| || || |||||| || || || || |||| ||| |||||||| Sbjct 4337 CTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCGAG 4396 Query 13046 GAGGGTCTTCCCCGTCCCTGG 13066 || |||||||| ||||| || Sbjct 4397 CAGCGTCTTCCCGGTCCCGGG 4417 >seq59150 Length=4554 Score = 102 bits (112), Expect = 1e-16 Identities = 234/351 (67%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 10495 GAGGAGACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGG 10554 |||| ||||| ||| | || || || ||| | ||| | ||||| || || || ||| Sbjct 4152 GAGGCCACGCCTTTCCACCCGCGGTCACCCTACGCCGTTGCCAAGGTCGCCGCGCACTGG 4093 Query 10555 CTCGTGAAGAATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAAC 10614 | || || ||||| |||| || ||||| | ||| ||| | ||||||||| Sbjct 4092 TACACCGTCAACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAAC 4033 Query 10615 CACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAA 10674 |||||||| || || || ||| | | ||||| || ||||||||| || || Sbjct 4032 CACGAGTCGCCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGTGCCGTCGGC 3973 Query 10675 CAAATCGTGGCGGGTG---AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGG 10731 | ||| || ||| ||| || || | | || |||||| ||||| ||| Sbjct 3972 CGCATCAAGGTGGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGG 3916 Query 10732 GACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAG 10791 |||||||| |||| ||| || || || |||||||||||| | ||||| || || || Sbjct 3915 GACTGGGGCTTCGCCGGGGATTACGTCGAGGCCATGTGGCTCATGCTCCAGCAGGACAAG 3856 Query 10792 GCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 | || || ||||||||||| || | |||| ||| |||| ||||||| Sbjct 3855 CCTGATGACTATGTCGTCGCTACCGAGGAGTGCCACACCGTGGAGGAGTTC 3805 >seq17570 Length=1015 Score = 98.7 bits (108), Expect = 1e-15 Identities = 234/351 (67%), Gaps = 2/351 (1%) Strand=Plus/Plus Query 12717 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 12776 |||||||| || ||| |||| ||||| || |||||||| || ||||| || | || | Sbjct 2 GGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGCGATCACGATGACG 61 Query 12777 CCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGT 12836 || | ||| |||||| ||||||||||| | || || || | || || || || Sbjct 62 CCGCTGTCGCCGCGGAAGCCGTCCATCTCAGTGAGCAGCTGGTTCAGCGTCTGCTCGCGC 121 Query 12837 TCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTC 12895 ||||| || | | || | |||| | ||| ||| ||||| ||||| || ||||| Sbjct 122 TCATCGTTGCCCCCGCCGA-TGCCCGTGCCGCGCTGCCGGCCGACTGCGTCGATCTCGTC 180 Query 12896 AATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTT 12955 ||||| || | ||||| || || ||| | || | || ||||| | | Sbjct 181 GATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAGGTCCCGCACCCGCGA 240 Query 12956 GGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGAC 13015 || || || ||||| |||||||| | || | | |||| | || |||||| || Sbjct 241 CGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCGGAGAGTGAGAAGAAGGGCAC 300 Query 13016 GTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || || |||||||| || ||| || || |||||||||||||| || Sbjct 301 GCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCGTCCCCGG 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597572109695160