Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq60244 194 3e-44 >seq60244 Length=9325 Score = 194 bits (214), Expect = 3e-44 Identities = 531/807 (66%), Gaps = 30/807 (4%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||| |||||||||| || || || ||||| | |||| ||||| Sbjct 476 CTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 535 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || |||| | || || ||| |||| | ||||||||| || || Sbjct 536 GGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCATGAGCAGGCGGTCTGCCACGAACTC 595 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||| || | Sbjct 596 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCGCA 655 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| ||||||| || || || |||| || |||| |||| || |||| Sbjct 656 GACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCTCGAAGACGCGGGACTCGT- 714 Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || ||||||| || |||| || | |||||||| || |||||||||||||| Sbjct 715 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 766 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 |||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| Sbjct 767 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTT 826 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061 || ||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || | Sbjct 827 CTTCAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGA 885 Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120 | || |||| | ||| | || ||| | | | | | |||| | |||||| Sbjct 886 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGGGCCCAG 941 Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176 || ||| ||||| | ||||| ||| |||| |||| || | | ||||| Sbjct 942 TCGGCC----TTGCGGCGAACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 997 Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236 ||| | || ||| || | || ||| ||||||||| || | ||| | || Sbjct 998 CTCGACGTCGTCGCGGATGTAGGTCTCTATGAGCAGCGAGTACATCTCGGAGTGGATGTT 1057 Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296 |||||||| ||||| ||| ||||||| | ||||| |||||| || | Sbjct 1058 CTCGATGGCGATCTGGAAGCCGTAGAAAGCCCTGGCCTCGGCGACCTGCACGTCAGACAT 1117 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | ||||||| ||| || ||||| || | ||| Sbjct 1118 GAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 1177 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 || |||||||| || | |||||| ||| ||| || | |||||||| | |||| Sbjct 1178 ATGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGAGTCGTGTCCCAGTGGCGCGCGTCGGA 1237 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443 || | || ||||| || ||| |||| Sbjct 1238 GGAGAGGTCCACCTCCTCGGCGGTCCA 1264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 774502027684560