Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_
202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq60244 194 3e-44
>seq60244
Length=9325
Score = 194 bits (214), Expect = 3e-44
Identities = 531/807 (66%), Gaps = 30/807 (4%)
Strand=Plus/Plus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| ||||| |||||||||| || || || ||||| | |||| |||||
Sbjct 476 CTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTT 535
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| ||| || |||| | || || ||| |||| | ||||||||| || ||
Sbjct 536 GGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCATGAGCAGGCGGTCTGCCACGAACTC 595
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828
|||||| | ||| | || | ||| || || | ||| ||||||||| || |
Sbjct 596 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCGCA 655
Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885
| |||||| ||||||| || || || |||| || |||| |||| || ||||
Sbjct 656 GACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCTCGAAGACGCGGGACTCGT- 714
Query 159886 CCCCGGCTTGCC---CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942
|| ||||||| || |||| || | |||||||| || ||||||||||||||
Sbjct 715 --CCAGCTTGCCGCGCAGGATGTCGT------AGAGGAGGCAGGCGAAGTCGCAGTGCAG 766
Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002
|||||||| || ||||||| ||||||||| | | ||||||||||||||| ||| |||
Sbjct 767 GCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTT 826
Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAA 160061
|| ||||| || |||| |||| ||| | | | | || ||||| ||||| ||| || |
Sbjct 827 CTTCAGCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGA 885
Query 160062 ACGCCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCAT 160120
| || |||| | ||| | || ||| | | | | | |||| | ||||||
Sbjct 886 AGGCGACGATGCGCTCGGC----GAAGCGCTCCCCGCCGTCGATCCAGCGGAGGGCCCAG 941
Query 160121 TCAGCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTG 160176
|| ||| ||||| | ||||| ||| |||| |||| || | | |||||
Sbjct 942 TCGGCC----TTGCGGCGAACGGCGGGGATGGTGTCGATGGCGCGGAAGAGGCGGTCCTT 997
Query 160177 CTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATT 160236
||| | || ||| || | || ||| ||||||||| || | ||| | ||
Sbjct 998 CTCGACGTCGTCGCGGATGTAGGTCTCTATGAGCAGCGAGTACATCTCGGAGTGGATGTT 1057
Query 160237 TTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGT 160296
|||||||| ||||| ||| ||||||| | ||||| |||||| || |
Sbjct 1058 CTCGATGGCGATCTGGAAGCCGTAGAAAGCCCTGGCCTCGGCGACCTGCACGTCAGACAT 1117
Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356
|||||| | || || | || | ||||||| ||| || ||||| || | |||
Sbjct 1118 GAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCAC 1177
Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416
|| |||||||| || | |||||| ||| ||| || | |||||||| | ||||
Sbjct 1178 ATGGGAGATGAAGTGGCGCTCGTCGTTGGAGAGAGTCGTGTCCCAGTGGCGCGCGTCGGA 1237
Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCA 160443
|| | || ||||| || ||| ||||
Sbjct 1238 GGAGAGGTCCACCTCCTCGGCGGTCCA 1264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 774502027684560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |