Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq71034 111 6e-20 >seq71034 Length=3563 Score = 111 bits (122), Expect = 6e-20 Identities = 238/336 (71%), Gaps = 20/336 (6%) Strand=Plus/Plus Query 54053 CACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGTTGACCCGTAAG 54112 |||||||||||| ||||||||||| ||| || | || ||| | |||| || ||| Sbjct 2282 CACCACAACTACGTGCAGAAGGAGCACCACTTCGGCAAGGATGTGCTGGTGACGCGCAAG 2341 Query 54113 GGTGCG--ATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCT 54170 || ||| |||| |||| ||| || | || ||| | |||||||| |||||||| | Sbjct 2342 GGCGCGGTATCGGCGCG--CGAAGGGGAGCTCGGCATCATTCCGGGATCGATGGGGGCGA 2399 Query 54171 GTTCGTATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGCTCGGC-GCCG-CACGG 54228 ||| ||||| ||||||||||||| |||| | ||| | | || || | ||||| Sbjct 2400 AGAGTTATATCGTGCGCGGCAAGGGCAATGCCGA-GAGTT-TCAACAGCTGCAGCCACGG 2457 Query 54229 TGCGGGCCGCCGGTTCTCGCGCA-CGAAGGCACGC-AAGCTGTTCACGGTCGACGACCTC 54286 || |||||| | |||| ||||| || || ||| || |||||||||||| Sbjct 2458 CGCCGGCCGCACCATGAGCCGCACCGAAGCCAAGCGCCGCTATT--CGGTCGACGACCAG 2515 Query 54287 G--AAGCGCGTATGACGGGCATCGAGTACCGCAAGGGCG-AGGCGTGGGTCGATGAGATT 54343 | ||| ||| || ||| |||||| |||||||| || |||||| | |||| |||| | Sbjct 2516 GTCAAG-GCGACCGA-AGGCGTCGAGTGCCGCAAGGACGAAGGCGT-GATCGACGAGA-T 2571 Query 54344 CCCGA-CGCTTACAAGCCGATCGACGTTGTGATGCA 54378 ||||| || |||||| ||||||| |||||||| Sbjct 2572 CCCGATGGCCTACAAGGACATCGACGCCGTGATGCA 2607 Score = 80.6 bits (88), Expect = 1e-10 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 53694 AGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCG 53753 |||| || || |||||||| ||| || |||||||||||| | ||||||||| | | | Sbjct 1929 AGCACCTGGGAACGCTGGGAACCGGTAACCACTTCATCGAGATCTGCCTCGACGAGCAGG 1988 Query 53754 ACCGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCG 53807 | ||| ||||| | |||||||| || ||||| |||||||| || ||||| Sbjct 1989 GCTTCGTCTGGTTCATGCTGCACTCGGGCTCGCGCGGCGTCGGCAATGCGATCG 2042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185889128224720