Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq71034 113 2e-20 >seq71034 Length=3563 Score = 113 bits (124), Expect = 2e-20 Identities = 239/338 (71%), Gaps = 24/338 (7%) Strand=Plus/Plus Query 54765 CACCACAACTACACGCAAAAGGAGCGGCACGGCGACCGTGATGTGTGGCTGACCCGTAAG 54824 |||||||||||| ||| ||||||| ||| || | |||||| | |||| || ||| Sbjct 2282 CACCACAACTACGTGCAGAAGGAGCACCACTTCGGCAAGGATGTGCTGGTGACGCGCAAG 2341 Query 54825 GGGGCG--ATCGACGCGAACGCCGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCT 54882 || ||| |||| |||| || || | || ||| | |||||||| |||||||| | Sbjct 2342 GGCGCGGTATCGGCGCG--CGAAGGGGAGCTCGGCATCATTCCGGGATCGATGGGGGCGA 2399 Query 54883 GTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGTGCTCGGC-GCCG-CACGG 54940 ||| ||||| ||||||||| ||| |||| | ||| | | || || | ||||| Sbjct 2400 AGAGTTATATCGTGCGCGGCAAGGGCAATGCCGA-GAGTT-TCAACAGCTGCAGCCACGG 2457 Query 54941 TGCGGGCCGCCGGTTCTCGCGCA-CGAAGGC--GCGCAAGCTGTTCACGGTCGACGACC- 54996 || |||||| | |||| ||||| | |||| ||| || |||||||||||| Sbjct 2458 CGCCGGCCGCACCATGAGCCGCACCGAAGCCAAGCGC-CGCTATT--CGGTCGACGACCA 2514 Query 54997 --TCGAGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCG-AGGCGTGGGTCGACGAGA 55053 || ||||| | | ||| |||||| |||||||| || |||||| | ||||||||| Sbjct 2515 GGTCAAGGCG---ACCGAAGGCGTCGAGTGCCGCAAGGACGAAGGCGT-GATCGACGAGA 2570 Query 55054 TTCCCGA-CGCATACAAGCCGATCGACGTCGTGATGCA 55090 |||||| || |||||| ||||||| ||||||||| Sbjct 2571 -TCCCGATGGCCTACAAGGACATCGACGCCGTGATGCA 2607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186513336177120