Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq12001 98.7 4e-15 seq856519 95.1 5e-14 seq844687 93.3 2e-13 >seq12001 Length=6810 Score = 98.7 bits (108), Expect = 4e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || |||||||||||||| ||||| ||||||||||| || ||||||| || || ||||| Sbjct 3539 GCTGTAATTACTGTTCCAGCTTACTTCAATGATGCTCAGAGGCAAGCCACCAAGGATGCT 3598 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || | ||||||||| | |||| | | || || |||||||| || || |||||||| Sbjct 3599 GGCCGTATTGCTGGACTTGATGTCCAAAGGATCATCAATGAACCAACTGCTGCTGCTCT 3657 >seq856519 Length=10792 Score = 95.1 bits (104), Expect = 5e-14 Identities = 196/290 (68%), Gaps = 5/290 (2%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || | ||||| || ||||| ||||||||| | || |||| ||||| || |||| Sbjct 8419 ATGCCGTTGTCACTGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACCAAGGATG 8360 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 | || |||||||||| | ||||| | || || || || || || ||||||||||| Sbjct 8359 CTGGTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAA 8300 Query 451440 TAGCATATGGACT----AGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTT 451495 | || ||||| || | ||| | || | | || || ||| | | | ||| Sbjct 8299 TTGCCTATGGTCTTGACAAGAAGGCTACCAGTGTC-GGTGAGAAGAATGTGCTTATCTTT 8241 Query 451496 GATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAA 451555 || | ||||| || ||| |||| ||| | || | ||||| || || | ||||| Sbjct 8240 GACCTCGGTGGCGGCACTTTTGATGTCTCTCTCCTCACTATTGAGGAGGGTATCTTTGAG 8181 Query 451556 GTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || ||||| || |||||| ||||| || || || || || |||| || Sbjct 8180 GTGAAGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTGACAA 8131 >seq844687 Length=8129 Score = 93.3 bits (102), Expect = 2e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || || || ||||| || || ||||||||||| || ||||| ||||| || || || Sbjct 3145 GCTGTGATCACAGTTCCAGCATACTTCAATGATGCCCAGCGGCAGGCAACCAAGGACGCT 3086 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | |||||| | ||||| ||||||||||| || |||||||| Sbjct 3085 GGTCGAATTGCTGGACTTGATGTTCAAAGGATTATCAATGAACCTACTGCTGCTGCTCTG 3026 Query 451442 GCATATGGA 451450 | |||||| Sbjct 3025 TCTTATGGA 3017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1923118638499308