Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq856519 118 8e-21 seq146241 100 2e-15 seq70678 100 2e-15 seq12001 96.9 3e-14 >seq856519 Length=10792 Score = 118 bits (130), Expect = 8e-21 Identities = 530/830 (64%), Gaps = 30/830 (4%) Strand=Plus/Plus Query 517495 GGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGAC 517554 |||||| | || || || || || | ||||||||| || || |||||||||| |||| Sbjct 7602 GGTCATGACTCCTCCGGCAGTCTCAAGACCAAGAGACAGTGGGGTGACATCAAGGAGGAG 7661 Query 517555 AATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 || | || | || || | | ||| || || || || || | |||||||| Sbjct 7662 AAGGTCCTGCACCTTCTCGTTCCCCTCACCGCTGAGGATTGCAGCCTGGACGGCAGCACC 7721 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 ||| ||||||||||||||||| |||| | || || || | || || ||||| || Sbjct 7722 ATAGGCAACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGCTCCTTCCCGTTGAAGAAG 7779 Query 517673 TTTGAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTC 517731 | || || || || | || | ||||| | | || || || || | |||| || Sbjct 7780 TCCTGCAGCAGCTG-CTGAACTCTGGGAATTCTGGTGGAACCACCGACAAGGACAACATC 7838 Query 517732 ATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGAC 517790 ||| | ||| | || |||| || | |||| | | || || || || || | | Sbjct 7839 ATGGATG-GTGCTCTTGTCCATCTTGGCATCCCTCAGACACTTCTCCACAGGCTCCATGC 7897 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850 | || || | ||| || || || || | || || || | ||| || Sbjct 7898 ACTTCCTGAAGAGGTCCATGTTGAGCTCCTCAAACCTGGCCCTGGTGATGGTGGAATAGA 7957 Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||||| ||| || || | ||||| | || || || ||||| | | ||||| || | Sbjct 7958 AATCAACTCCCTCAAAGAGTGAATCGATCTCGATGGTGGTTTGGGCAGTGGAAGAAAGGG 8017 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CT----TTT--GCTGA 517962 | || || | ||||||| ||||| || || | || | || ||| ||||| Sbjct 8018 TCCTCTTCGCCCTCTCACATGAAGTCCTGAGCCTCCTCAAAGACCTGGGGTTTCCGCTGA 8077 Query 517963 TTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 | ||| | || | || |||||||| |||| ||| | | || | ||| Sbjct 8078 T--------ATCCTTCTTGTGCTTCCTCTTGAACTCTTGGACAAAGTGGTTCACCATACG 8129 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| || || || || | | ||| | || | || || | || | || | Sbjct 8130 GTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTGGCCTTCACCTCAAAGAT 8189 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 || || |||| || | |||| |||||| || || ||||| | ||||| ||||| Sbjct 8190 ACCCTCCTCAATAGTGAGGAGAGAGACATCAAAAGTGCCGCCACCGAGGTCAAAGATAAG 8249 Query 518143 TACATTCATTTCTTTGTCT-TGGT-----TTTTATCAAGACCATACGCAAAAGCAGCAGC 518196 |||||| | || | | |||| | || ||||||||||| |||| ||||| || Sbjct 8250 CACATTCTTCTCACCGACACTGGTAGCCTTCTTGTCAAGACCATAGGCAATTGCAGCTGC 8309 Query 518197 AGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGT 518256 ||||| || || || || | || ||||||||||||||||| || ||||| || || Sbjct 8310 TGTTGGCTCGTTGATGATACGCATCACATTAAGACCAGCAATAACACCAGCATCCTTGGT 8369 Query 518257 GGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || || ||||| || || || ||||| ||||| | |||||||| Sbjct 8370 TGCCTGCCTCTGGGAATCATTGAAGTAAGCAGGCACAGTGACAACGGCAT 8419 >seq146241 Length=3333 Score = 100 bits (110), Expect = 2e-15 Identities = 527/826 (64%), Gaps = 24/826 (3%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||| || ||||| || | |||||| ||||||||||||||||| | || | Sbjct 3318 GTCATCACACCCCCGGCTGTCTCCAGACCAAGGGAAAGAGGAGTGACATCCAACAGCAGC 3259 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | || || | | || ||||| | || || || | |||||| || Sbjct 3258 AGGTCCTGGACCTTCTCGTTGCCCTCTCCGCTCAAGA-TGGCAGCCTGGACAGCAGCTCC 3200 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 || |||||||| |||||||| || | | || ||| || | || || ||||| || Sbjct 3199 GTAGGCAACAGCCTCATCAGGGTTGATGCTCTTGCAT--AGCTCCTTGCCGTTGAAGAAG 3142 Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | ||||| || || ||||||| | || || |||||||| | |||| ||| Sbjct 3141 TCCTGCAGAAGCTGCTGCACTCTAGGAATCCTAGTGGAACCTCCAACAAGGACAACATCA 3082 Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 ||||| ||| | || |||| |||| |||| | | || || || || || | || Sbjct 3081 TGCACG-GTGCTCTTGTCCATCTTTGCATCCCTCAGACACTTCTCCACAGGCTCCATACA 3023 Query 517792 CGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849 | || || | || || || || || || || | || | ||| | || Sbjct 3022 CTTCCTGAAGAGATCCATGTTCATC--TCCTCAAACCGGGCACGGGTGATGGTGG-AGTA 2966 Query 517850 TAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 517908 || || || || || |||| || |||| || || || || || | | || || || Sbjct 2965 GAAGTCTATGCCCTCAAACAGCGAGTCAATCTCGATGGTGGTCTGGGCAGTGGAGGAGAG 2906 Query 517909 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--A 517966 | | ||| || | ||||| | |||||| || || || | ||| ||| | ||| | Sbjct 2905 AGTTCTTTTTGCCCTCTCACAGGATGTCCTCAGCCTCCGAAGAGCTCTTG--GGTTGCCA 2848 Query 517967 TTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTA 518026 | | || | || | || ||||| || || | ||| | | || | | || Sbjct 2847 CTGATGTCCTTCTTGTTCTTCCTCTTAAACTCCTGGACAAAGTGGTTGACCATCCTGTTG 2788 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| || ||||| || | | ||| | || | || || | || | || | || Sbjct 2787 TCAAAGTCCTCACCACCAAGATGAGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCC 2728 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| | | ||||| |||||| ||| ||||| || | ||||| || || ||| Sbjct 2727 TCCTCAATGGTGAGAAGAGACACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACA 2668 Query 518147 TTCATTTCTTTGTCT-TGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 ||| | || | ||| || || ||||||||||| |||| |||||||| ||| Sbjct 2667 TTCTTCTCACCAACACTGGAAGCCTTCTTGTCAAGACCATAAGCAATGGCAGCAGCTGTT 2608 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | | ||||| | |||||||| || ||||| || || || Sbjct 2607 GGCTCGTTGATGATACGGAGGACATTGATGCCAGCAATGACACCAGCATCCTTGGTAGCC 2548 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 || || || ||||| || || |||||||| ||||| | ||| |||| Sbjct 2547 TGCCTCTGAGAATCATTGAAGTATGCAGGTACAGTTACAACAGCAT 2502 >seq70678 Length=6846 Score = 100 bits (110), Expect = 2e-15 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| || || ||||||| ||||||| || | || |||| |||| || | Sbjct 4815 ACATCAAAAGTACCGCCACCCAAGTCAAAAACTAGAA---TCGTTTCGTTGTTTT---TC 4762 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || |||| |||||| |||| || ||||||||||| ||||| ||||| | | ||| | Sbjct 4761 TTCTCAAAACCATAAGCAAGAGATGCAGCAGTTGGCTCATTTATAATGCGGAGAACTTCC 4702 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 || || ||||| | || ||||| || || ||| ||| ||||| || || || || || Sbjct 4701 AGTCCTGCAATACGGCCAGCATCCTTTGTTGCTGTTCTCTGTGAGTCATTGAAGTACGCC 4642 Query 518288 GGAACAGTAA 518297 |||||||||| Sbjct 4641 GGAACAGTAA 4632 >seq12001 Length=6810 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || |||| | ||||||||||||||||||||| || || || |||| ||| |||||| Sbjct 3666 CCGTACGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTTTGGACATCAAGTCCAGCA 3607 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || ||||| || |||||||| || || | ||| || || || || ||||||||| Sbjct 3606 ATACGGCCAGCATCCTTGGTGGCTTGCCTCTGAGCATCATTGAAGTAAGCTGGAACAGTA 3547 Query 518297 ATAACGGC 518304 || || || Sbjct 3546 ATTACAGC 3539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3677710107774106