Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq60244 136 5e-27 seq69706 107 2e-18 seq52215 102 1e-16 seq9471 95.1 1e-14 >seq60244 Length=9325 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||| || ||||| || |||| || || || || ||||| ||||||||||| || ||||| Sbjct 908 CTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 849 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 |||||| || | ||||| |||||||| || |||||||| || ||| |||||||||||| Sbjct 848 CTGCGCCATCTTCTGGCTGAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 789 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||| ||||| || |||||||| || ||| Sbjct 788 GCTCATCTCCCGCGACGAGGGCCTGCAC 761 >seq69706 Length=5322 Score = 107 bits (118), Expect = 2e-18 Identities = 200/289 (69%), Gaps = 16/289 (6%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1945 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 1886 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 | |||| || || || | ||||||||||||||||| ||||| ||||| || | | Sbjct 1885 ACAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAACAGCTGATTGAGA 1826 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACC-AGCACTG-----CGTTGCTTTCCC 16061 || || |||| |||||| ||| | |||||| | ||| | |||| |||| Sbjct 1825 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTTCCA 1772 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AA 16119 || |||||||| ||||||| || || ||||| || ||| || | | | |||| | Sbjct 1771 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTC-CTTG-GCCTTCTTGA 1714 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 ||||||| || ||||| || || |||||||||||||||||||| || Sbjct 1713 AGAGATCACGAACACGGGATGCACCAACACCAACAAACATCTCCACGAA 1665 >seq52215 Length=397 Score = 102 bits (112), Expect = 1e-16 Identities = 173/246 (70%), Gaps = 16/246 (7%) Strand=Plus/Plus Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTC 15992 || || || ||||| |||| | | ||| | | | |||||||||| |||||||| | Sbjct 5 CGGTTTGTGGCGGCCATGATGATGACGCCTTTGTTGCTATCAAAACCGTCCATCTCGACC 64 Query 15993 AAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCAC---CAGCACT- 16048 | ||||||||| | |||||||| || || || || | || ||| | ||| || Sbjct 65 AGAAGCTGGTTCAGTGTTTGTTCGCGCTCCTCGTTGCC--GCCGACCGCATTCAGTGCTC 122 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTT 16104 |||| |||||| | || |||| |||||||||||||| |||||| || ||| ||| Sbjct 123 GCGT--CTTTCCGAGTGCGTCAAGCTCATCAATGAAGATGATGCAGGGGGCTTTGGTTTC 180 Query 16105 CGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCA 16164 || || | ||||||||| || || || || ||||||||||| |||||||| | Sbjct 181 GGCTTGC----TTAAAGAGATCGCGGACCCGTGCTGCACCCACACCAACGAACATCTCGA 236 Query 16165 CAAAGT 16170 | |||| Sbjct 237 CGAAGT 242 >seq9471 Length=4830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 249/374 (67%), Gaps = 16/374 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || || ||||| || || |||||| ||||| | ||| | || || ||| Sbjct 4053 CGATCGAACCGCCCTGGCCGGAGAAGCGCGGAGTCAAGCACATCCGGCCTGTTGGTCGCG 4112 Query 15945 GCGATGACAACAATACC--TGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGT 16002 |||| || | | ||| |||||| | || || |||||||| || | ||||||| Sbjct 4113 GCGAGCACGATGACACCGCTGTTTCCGGAG--AAGCCGTCCATCTCCGTGAGCAGCTGGT 4170 Query 16003 TAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCC 16060 |||| || || |||| ||||| ||| | || ||| || |||| || ||| | || Sbjct 4171 TAATGGTCTGCTCCCTCTCATCGTTCCCCC-CAC-CCATTCCCGCACCACGCTGCCTCCC 4228 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTT 16116 ||||| |||||||| || |||||||||||||| || ||| || || | | Sbjct 4229 GACGGCGTCAATCTCGTCGATGAAGACGATGCAGGGCGCCTTGGCCTTGGCCTTC----T 4284 Query 16117 CAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 | ||||| |||| || | ||| ||||| || || || | ||| || || | | | Sbjct 4285 CGAAGAGGTCCCTCACCCTGGAGGCACCCACGCCGACGAAGAGCTCGACGAACTCAGACG 4344 Query 16177 CGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCT 16236 ||| || || |||||| || | || || || | ||| |||||||| || |||| Sbjct 4345 CGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCGAGCAGCGTCT 4404 Query 16237 TACCCGTACCTGGC 16250 | || || || ||| Sbjct 4405 TCCCGGTCCCGGGC 4418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 604619384328720