Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq17570 111 2e-19 seq60244 96.9 4e-15 seq890872 95.1 1e-14 seq52215 86.0 7e-12 seq40223 84.2 3e-11 seq124775 82.4 9e-11 >seq17570 Length=1015 Score = 111 bits (122), Expect = 2e-19 Identities = 310/467 (66%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 11518 GGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATG 11577 |||||||| || || | || || || || ||||| || ||||| || || | | | Sbjct 2 GGGCGGAGCAGCGCGGCGTCGAGGATCTCCGGCCGGTTCGTGGCGGCGATCACGATGACG 61 Query 11578 CCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGC 11637 || | || | ||| |||||||| || ||||| |||||||| | |||||| || ||| Sbjct 62 CCGCTGTCGCCGCGGAAGCCGTCCATCTCAGTGAGCAGCTGGTTCAGCGTCTGCTCGCGC 121 Query 11638 TCATCGTTG---GAGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCA 11694 ||||||||| | || || | ||||| |||| | ||||| ||||| ||||| Sbjct 122 TCATCGTTGCCCCCGCCGATGCC-CGTGCCG--CGCTGCCGGCCGACTGCGTCGATCTCG 178 Query 11695 TCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGC 11754 |||||||| || | ||||| |||| | |||| | ||| || || || || ||| Sbjct 179 TCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAGGTCCCGCACCCGC 238 Query 11755 TTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGG 11813 ||| || || || ||||||||||| | ||| | | | | | | ||| | |||||| Sbjct 239 GACGCGCCCACGCCCACGAACATCTCGATGAACTCCG-ACCCGGAGAGTGAGAAGAAGGG 297 Query 11814 AACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACC 11873 || | ||| || ||||| || || || || ||||| ||||| || || | || Sbjct 298 CACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTTCCCCGTCCCCGGCGGGCC 357 Query 11874 AGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTC-CAAAGTAGCGCTCAGGCTT 11930 | || || |||| ||||||| | || || || | || | | || || Sbjct 358 GACCAGCAGCACGCCCTTGGGGATCCTCGCCCCCAACGCCGTGAACTTG---TCCGGGAA 414 Query 11931 CTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGA 11977 ||||||||| | ||| ||||||| | |||| |||||| ||||| Sbjct 415 CTTGAGGAACTGCACGATCTCCTGGAAGTCCTGCTTGGCCTCGTCGA 461 >seq60244 Length=9325 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 762 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCC 821 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 822 CGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 881 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| | ||||| || || | || | ||||| ||| ||| ||||| Sbjct 882 GCGAAGGCGACGATGCGCTCGGCGAAGCGCTCCCCGC-CGTCGATCCAGCGGAGGGCCCA 940 Query 119687 GTTGGCCTTACG 119698 || |||||| || Sbjct 941 GTCGGCCTTGCG 952 >seq890872 Length=3693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||||||||||| ||||||||||| || |||||||||||||| || || || ||||| Sbjct 2349 GTAGATGTTAGATGTGTAGGGTTCAAAGCACTCATTGTTGCCAAGAATCTGACTGGTGGA 2408 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| |||||||| ||||||| |||||| ||||| Sbjct 2409 AGCAGTGGGCATTGGAGCCACCAGAAGAGAGTTTC 2443 >seq52215 Length=397 Score = 86.0 bits (94), Expect = 7e-12 Identities = 168/244 (69%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 11551 CGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTG 11610 |||||||| ||||| |||| | | ||| | | | || ||||||||||| || Sbjct 5 CGGTTTGTGGCGGCCATGATGATGACGCCTTTGTTGCTATCAAAACCGTCCATCTCGACC 64 Query 11611 AGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGC--CGAAC 11668 ||||||||||| | || ||||| ||||| |||||| || ||| | | | | | Sbjct 65 AGAAGCTGGTTCAGTGTTTGTTCGCGCTCCTCGTTG--CCGCCGACCGCATTCAGTGCTC 122 Query 11669 GCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGG----TTGGTTGGCA 11724 || |||| |||| ||||||| |||||| ||||| | ||| || || |||||| Sbjct 123 GCGTCTTTCCGAGTGCGTCAAGCTCATCAATGAAGATGATGCAGGGGGCTTTGGTT---T 179 Query 11725 CGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784 || || || | || || || || || || || || ||||| ||||||||||| ||| Sbjct 180 CG-GCTTGCTTAAAGAGATCGCGGACCCGTGCTGCACCCACACCAACGAACATCTCGACG 238 Query 11785 AAGT 11788 |||| Sbjct 239 AAGT 242 >seq40223 Length=380 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/87 (82%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 |||||||| |||||||||||| ||||| ||||||| |||||||| |||||||| || || Sbjct 101 TAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCTGTA 42 Query 136777 GGGAACAGCTTTTAGATATATTTTTTG 136803 | |||||||| | ||||||||| Sbjct 41 TGTGCCAGCTTTT---TCTATTTTTTG 18 >seq124775 Length=1808 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT- 136775 |||||||| |||||||||||| ||||| ||||||| |||||||| |||||||| || || Sbjct 972 TAGCTCAGCTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCACAGGTTCGAGACCTGTA 1031 Query 136776 TGGG--AACAGCTTTTAGATATATTTTTT 136802 |||| ||| |||| |||||||||| Sbjct 1032 TGGGCCAACCTTTTTTGCGTATATTTTTT 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573678077257800