Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq60244 131 2e-25 seq69706 100 3e-16 seq52215 95.1 1e-14 seq1980960 89.7 6e-13 >seq60244 Length=9325 Score = 131 bits (144), Expect = 2e-25 Identities = 309/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || || || || |||||||| |||||||| ||||| || | || ||| ||||| Sbjct 462 TACTCGCCGACGCGCTTCTCGAAGAAGTTTGTCTTGCCCTGCAGCGAGATGAGCTCCATC 521 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACG 117104 |||| || || || | ||||| | | || ||| |||| | | ||| || || Sbjct 522 CAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCAT-GAGCAGGCG 580 Query 117105 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACA 117164 || | ||| |||| ||||||| | ||| || |||||| |||| ||| || Sbjct 581 GTCTGCCACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGCA 640 Query 117165 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 117224 ||||| ||||| ||| |||| | ||||||| || || ||||| ||||| || Sbjct 641 GGGGAGCGCGTCGCAGACGAACTCCCTCTCAATGTCCACGGCCTCGGAGACGATCTCGAA 700 Query 117225 GATAGTTTCGGTAGTGGGTCTA--TTAC---GCA--AAGTCTT-GAAGAGCTCCACGGCA 117276 || ||| | | | || | || | ||| | ||| | || ||| || ||| Sbjct 701 GACG----CGGGACTCG-TCCAGCTTGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCG 752 Query 117277 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGC 117336 || || ||| || ||||| || ||||| || || || || |||||| ||||| ||| Sbjct 753 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 812 Query 117337 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 117396 ||||| ||||||||||||| ||| | || |||||||| || || ||||||||||| ||| Sbjct 813 ATGAGCCCCCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCC 872 Query 117397 TCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || || || || | | ||||||||||||| Sbjct 873 TCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 908 >seq69706 Length=5322 Score = 100 bits (110), Expect = 3e-16 Identities = 195/287 (68%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || ||| | ||| ||| | | || || || || Sbjct 1945 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAGATGTCAGCCCTGTTGGTGGCAGCA 1886 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 | |||| || || || | ||||||||||||||||| ||||| || || || | | Sbjct 1885 ACAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAACAGCTGATTGAGA 1826 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCAC-TG-----CGTTGCTTTCCC 9368 || || |||| |||||| ||| | |||||| || || | |||| |||| Sbjct 1825 GTCTGCTCCCTTTCATCGTTCCC------ACCACCGATACCTGTTCCTCTTTGCCTTCCA 1772 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||| ||||||| || || || || || ||| || ||| | | ||| Sbjct 1771 ACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAG 1712 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||||| ||||| | || || |||||||||||||||||||| || Sbjct 1711 AGATCACGAACACGGGATGCACCAACACCAACAAACATCTCCACGAA 1665 >seq52215 Length=397 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/209 (71%), Gaps = 16/209 (8%) Strand=Plus/Plus Query 9277 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9336 |||||||||| |||||||| || ||| ||||| | |||||||| || || || || Sbjct 42 TATCAAAACCGTCCATCTCGACCAGAAGCTGGTTCAGTGTTTGTTCGCGCTCCTCGTTGC 101 Query 9337 CTGGCATACCAC---CAGCACT-GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9392 | || ||| | ||| || |||| |||||| | || |||| ||||||||||||| Sbjct 102 C--GCCGACCGCATTCAGTGCTCGCGT--CTTTCCGAGTGCGTCAAGCTCATCAATGAAG 157 Query 9393 ACAATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGC 9448 | || || || ||| ||| || || | |||||||||||| |||| | || Sbjct 158 ATGATGCAGGGGGCTTTGGTTTCGGCTTGC----TTAAAGAGATCGCGGACCCGTGCTGC 213 Query 9449 GCCCACACCAACAAACATCTCCACAAAGT 9477 ||||||||||| |||||||| || |||| Sbjct 214 ACCCACACCAACGAACATCTCGACGAAGT 242 >seq1980960 Length=13069 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||||| |||||| ||||| || ||| | |||| |||| | || ||| Sbjct 2772 GCAATTGATGCCAGATTGCACACAGCAGTTTCAGTGGGACTTGTGAACTCAACTATCTCT 2713 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 || |||||||||||| |||||| || |||| ||| | ||| ||||| ||| ||||||| Sbjct 2712 GTGCACAAGTTGGAAGACTTAATTGTGCCCAGATTTTGTTGATTACTTTTTCTGTTGCA 2654 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || ||||||||||| |||||||| | || ||| | ||| | || Sbjct 1587 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGA 1528 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| ||| |||||| | | |||| ||||| || ||| ||| || || | | Sbjct 1527 GACATCATGTGGTATGTTTTGACAGCAGACTCAATATCATCCTTGTGTATCCCAACAGAA 1468 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTT--GAAGAT 107345 || | ||| ||||| | ||| ||| |||||| | | ||| | | | || | |||| Sbjct 1467 ACCCTCATTAACATATGTTGCGGTCTTTCCACAACTTTCCCACCAA--CTTTCAGTAGAT 1410 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 || | ||||||| || || | |||||| || || | ||| |||| Sbjct 1409 AGGACCTCTCAAGCGTCTTAAACCCAAAGAAATCATAGTCAAAGTC 1364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574656778821240