Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq31832 167 5e-37 seq50522 116 9e-22 seq50588 86.0 1e-12 seq894772 80.6 6e-11 >seq31832 Length=337 Score = 167 bits (184), Expect = 5e-37 Identities = 191/256 (75%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 9188 GCCGTATTACCCGAAGGGCGAGCGT---GGCCGGCCGCCGATTGGCCTGGAACGGATGCT 9244 |||||| |||||||| ||||| || ||||| |||||||| |||||||| || ||||| Sbjct 2 GCCGTACTACCCGAAAGGCGATGGTCGCGGCCGTCCGCCGATGGGCCTGGAGCGCATGCT 61 Query 9245 GCGGATCTACTTGCTGCAGCAGTGGTACGGGTTGTCGGACGAAGGGCTTGAAGATGCGCT 9304 ||| || ||| | |||||||| | ||| |||||||||| || | ||||||||| | Sbjct 62 GCGCATGTACATCGCCCAGCAGTGCTTCGGTCTGTCGGACGAGGGAATCGAAGATGCGAT 121 Query 9305 CTACGACAGCATCGCGATGCGCGCCTTCGCGGGCATCGACCTGGCGCGCGAGAACGTGCC 9364 |||||||||| |||| || | |||| || ||||||||| ||| ||| | ||| Sbjct 122 CTACGACAGCCAGTCGATTCGGGGTTTCGTCGGAATCGACCTGACGCACGAATCGGCGCC 181 Query 9365 GGACGCCACCACGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGACGCGAAA 9424 || || || |||||| |||| ||||| |||||||||| ||||| |||||||| Sbjct 182 TGATGCGACGACGCTGCTGAAGTTCCGTCGCCTGCTGGAGAAGCACAACCTGACGCGCCG 241 Query 9425 GCTGTTCGACGAGATC 9440 | | ||||| || ||| Sbjct 242 GATCTTCGATGAAATC 257 >seq50522 Length=209 Score = 116 bits (128), Expect = 9e-22 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34348 GCAACTTCCGGAACCTGTTCATGTACGCGCCGAAGGGCAAGAAGGACGGGATCCAGCTGC 34407 |||| ||||| |||||||||||| | |||| || ||||||||||| || | |||||| Sbjct 1 GCAATTTCCGCAACCTGTTCATGCATTCGCCCAATGGCAAGAAGGATGGATTGCAGCTGA 60 Query 34408 TGCCGATCGGCGAGGTGGCGGCGAAGGACGAGTTCTGGAACATCAAGAAGGTGACGGTCG 34467 | |||||| |||| |||||||| ||||| |||||| ||||||| ||||| | Sbjct 61 TCCCGATCAGCGAAGTGGCGGCCAAGGATGAGTTCACCGGCATCAAGCGTGTGACTCGTG 120 Query 34468 AGGATCAGCTCGCGGCGCACCGCGTGCCGCCGCAGTTGATGGGGATCATCCCGTCGAACG 34527 | || || || |||| ||| | || |||||| || |||| ||| | ||| ||| | Sbjct 121 ATGACATTCTGGCCGCGCTGCGCATACCCCCGCAGCTGCTGGGCATCGTGCCGCAGAATG 180 Query 34528 CGGGCGGGTTCGGC 34541 | || || |||||| Sbjct 181 CCGGTGGCTTCGGC 194 >seq50588 Length=314 Score = 86.0 bits (94), Expect = 1e-12 Identities = 115/158 (73%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 34215 GCGACGCTGTTTCGTCGGCGCTATTACAAGAACGGCAGCCATGCGGGCTTCATCCTGTAC 34274 || ||| |||| || || | || |||| |||||| ||||| || || ||||| ||| Sbjct 158 GCCACGTTGTTCCGCCGCAGGTACTACACCAACGGCTCGCATGCCGGGTTTATCCTCTAC 217 Query 34275 ATGACCGACCCG--GCCGACAAGCAGGAGGACGTCGACAACCTGCGCGCGGCGCTGAAGA 34332 |||||||| ||| |||| ||| | ||||| ||| | |||| | |||||| | Sbjct 218 ATGACCGATCCGCAGCCGGAGGGCATG--GACGTGGACGCCTTGCGTGAAGCGCTGCGGG 275 Query 34333 ACGCGAAGGGGCCGGGCAACTTCCGGAACCTGTTCATG 34370 || || ||||||||||| ||||| |||||||||||| Sbjct 276 ACTCGCGTGGGCCGGGCAATTTCCGCAACCTGTTCATG 313 >seq894772 Length=650 Score = 80.6 bits (88), Expect = 6e-11 Identities = 108/149 (72%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 9462 GGGCTGATGATGAAGGAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCC 9521 || |||||| | |||| ||| ||| ||||||||||||| | || ||| || || Sbjct 213 GGCCTGATGCTCAAGGCAGGTACGGCGGTGGATGCGACGCTGATCTCGGCACCGAGCTCG 154 Query 9522 ACGAAGAACG---CCGGGAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAAC 9578 || ||||||| |||| || || ||||| |||||||| ||| ||||| || | Sbjct 153 ACCAAGAACGGCACCGGTGAG---CGCGACCCAGAGATGCAGTCGACCCAGAAGAGCGGC 97 Query 9579 GACTGGTATTTCGGCATGAAGGCCCATGT 9607 ||||||| ||||| |||||||| ||||| Sbjct 96 AACTGGTACTTCGGGATGAAGGCGCATGT 68 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116096437066876