Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20vulgare_20subsp._20vulgare_20[genbank_20GCA_5F000326125.1_ 202012-11-15] 2,077,901 sequences; 1,779,486,241 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq50522 116 9e-22 seq50588 91.5 4e-14 >seq50522 Length=209 Score = 116 bits (128), Expect = 9e-22 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 30895 GCAATTTCCGCAACGTGTTCATGTACGCGCCGGGCGGGAAAAAGGACGGTATCCAGCTCA 30954 |||||||||||||| |||||||| | |||| || || ||||| || | ||||| | Sbjct 1 GCAATTTCCGCAACCTGTTCATGCATTCGCCCAATGGCAAGAAGGATGGATTGCAGCTGA 60 Query 30955 TCCCAGTGTCCGAGGTCGCGGCGAAGGACGAGTTCTTCAACATCAAGAACGTGACGCGCG 31014 |||| | ||| || ||||| ||||| |||||| | ||||||| ||||| || | Sbjct 61 TCCCGATCAGCGAAGTGGCGGCCAAGGATGAGTTCACCGGCATCAAGCGTGTGACTCGTG 120 Query 31015 ACGACCTGCTCGCCGCGCATCGCGTGCCGCCGCAACTGCTCGGTATCGTGCCGAGCAATT 31074 | ||| | || ||||||| ||| | || ||||| ||||| || ||||||||| ||| Sbjct 121 ATGACATTCTGGCCGCGCTGCGCATACCCCCGCAGCTGCTGGGCATCGTGCCGCAGAATG 180 Query 31075 CGGGCGGGTTCGGCACG 31091 | || || |||||| || Sbjct 181 CCGGTGGCTTCGGCTCG 197 >seq50588 Length=314 Score = 91.5 bits (100), Expect = 4e-14 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 30738 CACTCGGCCTGGCTGAACGAGTCGTCGACGCTGTTCCGGCGGAAGTATTACGAAAACGGT 30797 || ||||| ||| ||||| ||| | ||| ||||||| || | ||| ||| ||||| Sbjct 134 CAGTCGGCGCTGCTCAACGAATCGGCCACGTTGTTCCGCCGCAGGTACTACACCAACGGC 193 Query 30798 AGCCACGCCGGCTTCATCCTCTACATGACCGACGCGGCGCAGAAGCAGGAGGATGTCGAC 30857 || ||||| || ||||||||||||||||| || || | || ||| || ||| Sbjct 194 TCGCATGCCGGGTTTATCCTCTACATGACCGATCCGCAGCCGGAGGGCATGGACGTGGAC 253 Query 30858 AACATGCGCACGGCGTTGAAGAACGCGAAGGGGCCGGGCAATTTCCGCAACGTGTTCATG 30917 | |||| ||| || | || || ||||||||||||||||||||| |||||||| Sbjct 254 GCCTTGCGTGAAGCGCTGCGGGACTCGCGTGGGCCGGGCAATTTCCGCAACCTGTTCATG 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126455168036954